KEGG   Methylophaga marina: GCM100_29000
Entry
GCM100_29000      CDS       T09183                                 
Name
(GenBank) MBL fold hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mmaf  Methylophaga marina
Pathway
mmaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCM100_29000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmaf03019]
    GCM100_29000
Messenger RNA biogenesis [BR:mmaf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GCM100_29000
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: BDZ75181
LinkDB
Position
2852630..2854006
AA seq 458 aa
MTPDESDFWFLPLGGTGEIGMNLNLYGHDGRWLMVDCGVTFEAKTDIDGEPVEGAQAHVQ
MADPQFIVDRKEQLDGLVITHAHEDHIGAVPYLWERFRCPIYTTAYTAEILRRKLAEAGL
IKKVKVHVVEAHASRQIGVFNVQWIQLTHSIPDPFALLITTPVGKAFHTADWKLDSAPVV
GEPYKEEDYARLGELGVDVMVCDSTNANVPGWSTSEATLYKGLKHHVEQAKGRVVVTCFG
SNIARLRTVADIAKETGRHLGLLGRSLLNTYSAAKRVGLWNGIETFVDPHHLGFLPRDTV
LLVATGSQGEPRTALNRLSQNSFRDIELEAGDTVIFSSKVIPGNELPIEALIERLKGMQV
DVITVDNSRLEIHASGHPAMEELKAMYRWVKPACAIPVHGEFQHLRANARLAKSVGVPEQ
LEGKNGDLYYIAPVKGIRRGAVKTGRLGLVQDKLKKLF
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgacacctgatgagtctgacttctggtttttgccactgggaggaaccggcgaaataggc
atgaacctgaatctttatggccatgatggccgttggttaatggtggactgtggggtgacg
tttgaggcaaaaacagatattgacggtgaaccagtagaaggtgctcaagcccatgtgcag
atggctgatccacaatttattgtcgatcgaaaagaacaactggatggtctggtcatcacc
catgctcatgaagaccacatcggtgctgttccttatttgtgggaacggtttcgttgtcct
atctacaccacagcttatacggcagaaattctgcgcagaaaactggctgaagccgggtta
atcaaaaaagtgaaagtccatgtggttgaggcacatgcatcaagacaaataggcgtcttt
aatgtgcagtggatccagctaacacattccattcctgatccgtttgctttattgatcacc
acccctgttggtaaagcgtttcataccgctgactggaagcttgattccgcaccggtggtg
ggcgaaccctataaagaagaagattatgcgcggctgggtgagctgggcgttgatgtgatg
gtgtgtgattcgaccaatgccaatgtacctggttggtcaacatctgaagcaacgttgtac
aaaggcctgaaacatcatgtagaacaggcaaaagggcgggttgtagtcacctgctttggc
agcaatattgcccgtttacgaacggtagcagatattgctaaagaaacgggaagacacctc
ggcttattaggtcgctcgctattaaacacgtattcagcagccaaacgtgtgggtctatgg
aatggcattgaaacctttgtcgacccgcatcatttaggttttctgccgcgcgatactgtt
ctattagttgcaacgggaagtcagggagaacccagaacagcgctaaaccgactcagtcag
aacagtttccgtgatattgaactagaagctggggatacggttattttcagttccaaagtg
attcctggtaatgaattaccgattgaagcattaattgaacggctcaaaggcatgcaggtg
gacgtgattacggtggataacagccgactggaaattcatgcttctggtcatccggcgatg
gaagagttgaaagccatgtatcgctgggttaaacccgcttgtgctattcctgttcatggt
gagtttcaacaccttagagccaatgccagactggcaaagtcagtgggggtgcccgaacag
cttgaagggaaaaatggtgatttatactacatagcacctgtcaaaggaatacgacgtggg
gctgtgaaaactggccgcttgggtcttgttcaggataaactgaaaaaattgttttaa

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