Methylophaga marina: GCM100_29000
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Entry
GCM100_29000 CDS
T09183
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_29000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_29000
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM100_29000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BDZ75181
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Position
2852630..2854006
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AA seq
458 aa
AA seq
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MTPDESDFWFLPLGGTGEIGMNLNLYGHDGRWLMVDCGVTFEAKTDIDGEPVEGAQAHVQ
MADPQFIVDRKEQLDGLVITHAHEDHIGAVPYLWERFRCPIYTTAYTAEILRRKLAEAGL
IKKVKVHVVEAHASRQIGVFNVQWIQLTHSIPDPFALLITTPVGKAFHTADWKLDSAPVV
GEPYKEEDYARLGELGVDVMVCDSTNANVPGWSTSEATLYKGLKHHVEQAKGRVVVTCFG
SNIARLRTVADIAKETGRHLGLLGRSLLNTYSAAKRVGLWNGIETFVDPHHLGFLPRDTV
LLVATGSQGEPRTALNRLSQNSFRDIELEAGDTVIFSSKVIPGNELPIEALIERLKGMQV
DVITVDNSRLEIHASGHPAMEELKAMYRWVKPACAIPVHGEFQHLRANARLAKSVGVPEQ
LEGKNGDLYYIAPVKGIRRGAVKTGRLGLVQDKLKKLF
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacacctgatgagtctgacttctggtttttgccactgggaggaaccggcgaaataggc
atgaacctgaatctttatggccatgatggccgttggttaatggtggactgtggggtgacg
tttgaggcaaaaacagatattgacggtgaaccagtagaaggtgctcaagcccatgtgcag
atggctgatccacaatttattgtcgatcgaaaagaacaactggatggtctggtcatcacc
catgctcatgaagaccacatcggtgctgttccttatttgtgggaacggtttcgttgtcct
atctacaccacagcttatacggcagaaattctgcgcagaaaactggctgaagccgggtta
atcaaaaaagtgaaagtccatgtggttgaggcacatgcatcaagacaaataggcgtcttt
aatgtgcagtggatccagctaacacattccattcctgatccgtttgctttattgatcacc
acccctgttggtaaagcgtttcataccgctgactggaagcttgattccgcaccggtggtg
ggcgaaccctataaagaagaagattatgcgcggctgggtgagctgggcgttgatgtgatg
gtgtgtgattcgaccaatgccaatgtacctggttggtcaacatctgaagcaacgttgtac
aaaggcctgaaacatcatgtagaacaggcaaaagggcgggttgtagtcacctgctttggc
agcaatattgcccgtttacgaacggtagcagatattgctaaagaaacgggaagacacctc
ggcttattaggtcgctcgctattaaacacgtattcagcagccaaacgtgtgggtctatgg
aatggcattgaaacctttgtcgacccgcatcatttaggttttctgccgcgcgatactgtt
ctattagttgcaacgggaagtcagggagaacccagaacagcgctaaaccgactcagtcag
aacagtttccgtgatattgaactagaagctggggatacggttattttcagttccaaagtg
attcctggtaatgaattaccgattgaagcattaattgaacggctcaaaggcatgcaggtg
gacgtgattacggtggataacagccgactggaaattcatgcttctggtcatccggcgatg
gaagagttgaaagccatgtatcgctgggttaaacccgcttgtgctattcctgttcatggt
gagtttcaacaccttagagccaatgccagactggcaaagtcagtgggggtgcccgaacag
cttgaagggaaaaatggtgatttatactacatagcacctgtcaaaggaatacgacgtggg
gctgtgaaaactggccgcttgggtcttgttcaggataaactgaaaaaattgttttaa
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