Methylophaga marina: GCM100_29600
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Entry
GCM100_29600 CDS
T09183
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_29600
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM100_29600
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM100_29600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
AAA_25
T2SSE
ABC_tran
AAA_23
TsaE
ResIII
AAA_30
SRP54
Put_Phosphatase
PhoH
Motif
Other DBs
NCBI-ProteinID:
BDZ75241
LinkDB
All DBs
Position
complement(2907768..2911655)
Genome browser
AA seq
1295 aa
AA seq
DB search
MNNAEQNLTQLIQSSMLSDRYRLQRQWQQLRKNKADAEKISAFTQRVLRSVERAQQRLKQ
IPKPDFSADLPVIERRHEVAKAIEENQVIILCGETGSGKTTQLPKICLDLGRGVTGMIGH
TQPRRIAARTVATRIAEELGSEIGQTVGYKVRFHDQVNAENSYIKLMTDGILLAETQNDR
FLNQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKVIITSATIDTERFSKHFEHAPV
IEVSGRTYPVEIRYRPLLTTDEDSPDYDMVSGIVAAVDELCREGPGDVLIFLAGERDIRD
VSEALRKHHPPQTEILPLFARQSAAEQNRVFKTGGQRRIILSTNVAETSLTVPGIRYVVD
PGNARISRYSVRNKVQRLPIEKISQSSANQRSGRCGRVAAGVCIRLYDEEDFNNRPAFTD
PEVLRTNLASVILQMSALKLGNPAKFPFINPPPQKMINDGYRLLDELGAVDKQRRITDIG
RQLSKLPIDPKIARMLLAGAEQNSLTEVLIIASALSIQDPRERPMDKQQAADEAHSKYKD
ERSDFIAFIKLWNHYHDKKKHLSQNKLRKYCKEQFLSFLRLREWHDIHQQLHVQLAELGL
KFNQQEASYDSIHRALLAGLLSHIATKTDKFEYTGGRNLKLQIFPGSALHKKGPKWIMAA
ELVETGKLYARIVAKIEPEWIEPIAGDLVRRQYTDPHWEKKPAQVVAFESVTLNGLPIVN
RRRIHYGPIDPSLSNEIFIRSALVEGDWHCQAKFFQHNQRLIEEIELLEQKSRRRDVLVD
DDTLFDFYRSKVPDNIINGAGFDNWCKQAEKKDPNLLMLSKEILMQHQAEQVTVDQFPDQ
ILINRVPLPLEYHFEPGKAEDGITQTIPLSLLNQTSKERYEWLVPGLLREKVIFLIKALP
KSLRRHFIPVPQYADQCIKSMSADSGALLPALSEQLRKLTGIEIDVTDWRTEDLPLYLQM
NFKLVDEQGELLDESRDLDKLKENWAREAAASFRQIPDSDYEKKGLSTWSFDSLPEHITL
EQNGLQVTAYPALVDRGDCVDLTLMDTKPQAQALTRHGLRRLFMLNQADAVKYLHKNLPD
IKQMCLHYANVPPSPYSDDAQTDLTPCEQLKTDLIQVAFDRCFILDKPAITDKNAFEQRI
AERKSELINLAAKLAQSIAKPLAEYHAIAKRLSGNIPLAAINSVNDIKQQLSFLIYQGFV
HDTPDEALTRLPVYCQAAGIRLDRLLTDPNKDKQRMSEVMPHWQKFINKVNKIETPAFRE
YRWMLEEFRISVFAQELKTAYPISGKRLEKQWQEC
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacgctgagcaaaacttaacgcaacttatccagtcctccatgctatctgatcgt
tatcgtcttcaacgtcagtggcagcaattacgtaaaaataaggcagatgctgaaaaaatc
agcgccttcactcagcgtgtgttgcgatccgttgaacgtgcgcaacagcgcttgaaacag
atacccaaaccggatttcagtgctgacttacccgttatcgaacgtcgacatgaagtcgcc
aaagctattgaagagaatcaggtcattattctctgtggcgagaccggctctggtaaaacc
actcagttacccaaaatttgcctggatttaggccgtggtgttactggcatgataggccat
actcagccacgccgaatcgcagccagaacggtagcgacacgtattgccgaagagttaggc
tcagaaattggacaaaccgtgggttacaaagtccgttttcatgatcaagtgaatgctgaa
aacagttatatcaaactgatgacagatggtattttactggctgagacacaaaatgatcgc
ttcctgaatcaatacgacaccctgattatcgatgaggcccatgaacgcagtctcaatatt
gattttttactcggttatatcaaacagctgttacccaaacgccctgatttaaaagtcatt
attacttcagcaacaatcgataccgaacgcttttccaaacattttgagcatgccccggtg
attgaagtcagtggccgtacctacccagtagaaattcgctaccgccctctcctcacaacc
gatgaagactcacccgattatgatatggtctcaggtattgtggcagcagttgatgagctc
tgccgagaagggcccggagatgtattgatattcttggccggcgagcgtgatattcgtgat
gtatcagaagctttacgcaaacatcatccgccacaaactgaaattttacctttattcgcc
agacaatctgctgctgaacaaaaccgggtgtttaagaccggtgggcaacgacgaattatc
ttatctactaatgttgctgaaacctcattaacggtgccaggcattcgctacgttgttgac
ccaggaaatgcacgtatcagtcgttacagtgttcgcaataaagtacaacgtctcccgata
gaaaaaatttcccaatccagtgcgaatcaacgatcagggcgttgtggccgtgtagccgct
ggcgtgtgtatacggttgtacgacgaagaggattttaataaccgcccggcatttactgat
ccagaagttcttcgcactaatctggcatcagtcattctacaaatgtcagcgttgaaactg
ggtaatccagctaagtttccttttattaatccgccgccacaaaaaatgatcaacgacggt
tatcggcttttagatgaattgggtgccgtcgataaacaacgtcgtattactgacattggc
agacagttatccaagctgcccatcgatcctaaaatagcccggatgttgcttgcaggtgca
gaacaaaacagtctgactgaagtgctcattattgccagtgctttgagtattcaggatcca
cgtgaaagaccgatggacaagcagcaggcggcggatgaggcccattctaaatataaggac
gaacgttctgattttattgcttttattaaactctggaatcattatcacgataagaaaaaa
caccttagtcagaataaactaagaaagtattgtaaagagcaatttctctccttcttacgc
cttcgtgaatggcatgacatccatcaacaactgcatgtgcaactggctgaactgggctta
aaattcaatcaacaagaggccagttatgacagtattcatcgcgcactgctcgctggttta
ctgagtcacatcgccacaaaaacagataagtttgaatacacaggcggacgaaacctcaag
ctacaaatatttcctggctcagctttgcataaaaaagggcctaaatggatcatggcggct
gagctggttgaaaccggtaaattgtatgcgcgcattgtggctaaaatcgaacccgaatgg
attgagccaattgctggtgacctggtcagacgtcaatacactgacccacactgggagaaa
aaacccgcccaggtggttgcctttgagtcagtcacactgaatggcttacccattgttaat
cgcaggcgtattcactacggacctattgacccttctttatcaaatgaaatttttattcgc
tcagcattagttgaaggtgactggcattgtcaggcaaaatttttccaacataaccaacgt
ctcattgaagaaattgagttacttgaacaaaagtctcgtcgtcgagatgtgttagtcgat
gacgataccttgtttgatttctatcgcagcaaagtaccggataacatcattaacggtgcc
ggtttcgataactggtgtaagcaagcagaaaagaaagaccctaatctgctcatgctaagc
aaagagattctgatgcaacatcaggctgaacaagtcaccgtcgatcagtttcccgatcag
attcttatcaatcgtgttcctctgccgcttgaatatcattttgaacccggtaaagccgaa
gatggcatcactcagacaattccgctctctctgttgaatcagacaagtaaagaacgttat
gagtggttggtaccaggcttacttcgcgagaaagtgattttcttgattaaagcgctaccc
aaatcattgcgtcgtcattttattccagtacctcaatatgccgaccaatgcatcaaatcc
atgtcggctgactcgggcgctctattaccagcgctcagtgaacaactgagaaaactgaca
ggtattgaaattgatgtgacggattggcgtactgaagatctgccgctatatctgcaaatg
aattttaagctggtagatgagcaaggtgaactattagatgaaagtcgtgacctggataaa
ctaaaagaaaactgggcacgagaagccgctgccagtttcaggcaaattcctgacagtgac
tatgaaaagaaaggactgtcaacctggtcatttgactcactaccagaacatatcacacta
gaacaaaacggcttacaagtcaccgcttatccagcgcttgtcgatagaggggattgcgtt
gatttaaccttaatggatacaaaacctcaggctcaggccttaacacgacacgggcttcgc
cgccttttcatgttaaatcaagcagatgcagtcaagtatttgcataaaaatctaccagat
atcaaacagatgtgcttgcactatgccaatgtgccgccatcgccatactcagatgatgca
caaacagacctgacgccgtgtgaacaacttaaaaccgacttaattcaagtggcctttgac
cgctgctttattttggataagccggccatcacggataaaaatgcattcgaacaacgtatc
gccgaaagaaaaagtgagctaattaatctagccgctaaactcgctcagagtattgctaag
ccgcttgctgaatatcatgcaattgcaaaaagactgtctggcaacatcccactggccgcc
attaactctgtaaacgatatcaaacaacaattaagctttttgatttatcaggggtttgtg
catgatacgccagatgaagccttgaccaggttgcccgtatattgtcaggctgcaggtatc
agattggatcgtctattgaccgatcccaataaagacaaacaacgcatgtccgaagtcatg
cctcactggcaaaagttcatcaataaggtcaacaaaatcgaaacaccagcctttagagag
tatcgttggatgctggaagaatttcgtatttcagtctttgctcaagagcttaaaaccgct
taccccatctcgggtaagcgcttggaaaagcagtggcaagaatgttga
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