Methylophaga marina: GCM100_29790
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Entry
GCM100_29790 CDS
T09183
Symbol
hepA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_29790 (hepA)
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
GCM100_29790 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_22
NttE
Motif
Other DBs
NCBI-ProteinID:
BDZ75260
LinkDB
All DBs
Position
2924922..2927771
Genome browser
AA seq
949 aa
AA seq
DB search
MSESAFIVGQRWVSNSEAELGLGIIQESSGRRIEVFFPAAAESRFYAADNAPLSRVIYSE
GDKVSTREDVSFVISAVQPFNGCYIYQGDTETGEPISIHEMDLDSRVHFNQPQDRFFAGQ
VDKNSQFELRAKTLNYQHELLKSPAYGLLGGRVQLLPHQLYIAQQVAQRFAPRVLLADEV
GLGKTIEAGLILHKQVLSGQVRRALIVVPDALLHQWLVEMLRRFNLTFTLIDHERHEALQ
ELDEGNPFESAQMVLCGLNDLLANPQMQVDMLATEWDMLIVDEAHHLAWSPEQSSEGYQL
VETLAAQIPALLLLTATPEQLGIESHFARLRLLDSDKFYDFDAFVKQEAAYQPVSELIEQ
LDAAESWTQLSPAQQSQLKEYLDEMLFEQLSAEEAYIDTKVDAIQQLLDRHGTGRVLYRN
TRDVVKGFPNRLLHQYELPLPDALSDEDLSHIILPEQHFTDVDWLKHDSRVSWLVDFLKA
HRDDKILIICAQADTAQQLENHLNISQGIRSAVFHEGLSLVNRDRAAAYFADDEDGAQCL
VCSEIGSEGRNFQFSHHLVLFDLPVNPDLLEQRIGRLDRIGQHHDVHIHVPYYADTAQSI
LLQWYHQGMNAFEQVLAAGQRIANVTKPALEAAMAEPANQALLDSLIQQTQEVSEQTLTE
LQSGRHRLLERHSFNETQAESVVADVEILSRSLELAGFMDDVFDAFGVDQHPHSTDSIII
EPGTHMQTQFPELPDEGLTATYQRHKALGREDMSFLTWEHPMVLGAMDMVLNSDLGNSAF
CTLATDEVKAGSLLLEAIFVMRTISERDLQIQRFISESHIRLVVDERGKQYQTVFDEHDF
NKIAGRIPRATAQELIRHARAPVENLLAQAKNAVTDMEDTLKQEALANMNNELDQEYQRL
SALAKVNPNIRQQELDYLKQRQEKLNAGIQSASLSLDAIRVAIVTDPTN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagaaagtgcatttatcgtaggccaacgctgggtcagtaatagcgaagcagagctt
ggtctgggtatcattcaggaaagcagtggacgtcgtattgaagtattcttccccgcggcg
gcagagagtcgtttttatgctgctgataatgcgcctttaagccgtgtcatctattctgaa
ggggataaagtcagcacgcgtgaggatgtgagttttgtgattagcgccgtgcaacccttt
aatggttgttatatctatcaaggcgataccgagacgggtgaacccatcagtatccatgaa
atggatctggatagccgtgttcactttaaccagcctcaagaccgctttttcgctggtcag
gtcgataaaaacagtcagtttgaattacgtgcaaaaacactcaattatcagcatgaactc
ctaaaatcgccggcatatggcttattaggcggccgtgttcaacttttaccacatcagcta
tatattgctcagcaggtagcgcaacgatttgcaccacgtgtgttactggcagatgaagtc
ggactcggtaaaaccattgaagcaggtctgattttacacaaacaggtcttatccggtcag
gtcagacgagcacttatcgttgtgccagatgcattattgcatcaatggttagtggaaatg
ctccgccgctttaatctgacttttaccttgattgaccacgaaaggcacgaggcgctgcaa
gaactcgatgaaggcaatccttttgagagtgctcaaatggtgttgtgtgggttaaatgac
ctattggctaacccacagatgcaggtcgacatgttggcgacagagtgggatatgctgatt
gtggatgaagcgcatcacctggcatggtcacctgaacaatcaagtgagggttaccaactg
gttgaaacgctcgcggctcagattccggcattattattgttaacggccacccctgaacaa
ttaggtattgaaagtcatttcgcgcgcctgcgtttgctcgactctgataagttttatgat
tttgatgcatttgtgaagcaagaagcagcatatcaaccggtcagcgaattaatcgaacag
cttgatgccgcagaaagttggacgcaattatcaccagcgcagcagtcacagcttaaggaa
tatctcgatgagatgttatttgagcagttaagtgctgaagaagcgtacatcgatacaaaa
gtggatgccattcaacaacttctcgacagacatggcaccggtcgggtgctgtatcgaaat
acacgtgatgtggtgaaaggcttcccgaatcgactacttcaccaatatgaattgccgctt
ccggatgctttgtcagatgaagatctgagtcatattattttgcctgaacaacatttcacc
gatgttgactggttaaaacacgatagccgcgtcagttggctggttgattttcttaaagcg
catcgcgacgataaaatcttaatcatctgtgctcaggctgacaccgcccaacagcttgag
aaccatctcaatatcagtcaaggcatacgttcagcagtgttccatgaagggttgagcctg
gtgaatcgtgaccgtgctgcagcttattttgcagatgatgaagatggggcgcagtgcctt
gtttgttccgagatcggcagtgaaggacgtaactttcagttttcacatcatctggtgtta
tttgacttaccggttaatccggatttgttggaacaacggattggtcgattggatcgtatc
ggccagcaccatgatgtgcatatccatgtcccttattacgccgatacagcacaatccatt
ttattgcagtggtatcaccagggtatgaatgcgtttgaacaggtgttggctgcaggacag
cgtattgcgaatgtgacaaaaccagcactggaagccgccatggctgaaccagcaaaccag
gctttattagatagtctgatacaacaaacacaggaagtttccgagcaaacgctgacagaa
cttcagtctgggcgccatcgcttacttgagcgtcattccttcaatgagactcaggcagaa
tcagttgtggcggatgttgaaatcttatcccgttcacttgagttggccggttttatggat
gatgtgtttgatgcctttggcgtagatcaacatcctcatagcacagacagcattatcatc
gaacctggcacgcatatgcagacacagttcccggaactgccagatgaaggactgactgcg
acctatcaacgccacaaagcactgggtcgtgaggatatgagctttctgacatgggaacat
cctatggtgctgggcgcaatggatatggtgttgaatagtgatttaggcaatagtgcattt
tgcaccctagcaactgatgaggtgaaagctggcagtttattgctggaagccatatttgtt
atgcgcactatttcggaacgggatctacagattcaacgctttatttctgaaagccacatt
agactggtagtggatgaacgtggtaaacaataccaaaccgtgtttgatgagcatgatttc
aataaaatagccggtcgcatcccaagagcaacagctcaggaattgattcgtcatgcccgt
gcccctgtcgagaacttgctcgcccaggccaaaaatgcggtgacagacatggaagacaca
ttaaagcaggaagcactggctaatatgaataatgagttggaccaggaatatcagcgtttg
agtgccttggcaaaagtcaacccgaatatccgacaacaagagctggattatttgaaacag
cgccaggaaaagttgaatgctggcattcaatcagcctcattatcgctggatgccatacgg
gtggctattgtgactgatcccactaactaa
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