Methylophaga marina: GCM100_30850
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Entry
GCM100_30850 CDS
T09183
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03030
DNA replication
mmaf03430
Mismatch repair
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM100_30850 (holB)
03430 Mismatch repair
GCM100_30850 (holB)
03440 Homologous recombination
GCM100_30850 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmaf03032
]
GCM100_30850 (holB)
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_30850 (holB)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCM100_30850 (holB)
DNA replication proteins [BR:
mmaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GCM100_30850 (holB)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GCM100_30850 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
BDZ75366
LinkDB
All DBs
Position
complement(3033787..3034755)
Genome browser
AA seq
322 aa
AA seq
DB search
MKTELYPWHQLAWQHIVSLYQSKRMPHALLLNGIYGLDNDVLANKLTKSLLCLNPTEDFE
SCNTCHSCQLFSAESHPDHTVLKPEEAGKQIKVDQIRQLKDLQSLMPKVSPAKTVIIQQA
DHMNTNAFNSLLKLLEEPQDNTILILVASSLHRLPITIKSRCQTITISRPEYALAAEWLQ
SQSDWNQQEIETVLKLAHGGPVAALDIGEEGIEQSKQVFRGMAALMRAEANPVQLASQWQ
AFDLISVLHQLQAMIQTKLASLLDGKEQLESHLLKHYWAISDCIIHTMKLLSSQNNLNKT
LLLEDLMVSIMQHARQIQQHQQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacagagctatatccctggcatcagcttgcttggcaacatattgtttcactttat
cagtctaaacgaatgcctcatgctcttttgctaaacggaatctatggactagacaatgat
gtgcttgccaacaagctgactaaaagtctgttatgtctaaatccgacggaggactttgag
agctgcaatacttgtcatagctgtcagttattttcagcagaaagtcatccagatcatact
gttctaaagccagaggaggccggtaagcagataaaagtcgatcaaatccggcagctgaaa
gatttacagtccttaatgcctaaggtttctccagctaaaactgttattatccagcaagca
gatcatatgaataccaatgcttttaacagtttgttaaagctgcttgaggaaccgcaggat
aataccatcctaattctggtggccagctcgctccacagacttccaataacgataaaaagc
cgttgtcaaacgattactatctcacgaccagaatatgctctggctgctgaatggttacag
agccaatccgactggaatcagcaggagattgagactgtgctgaaactggctcatggtggg
ccagtagctgcactagatataggtgaagaagggattgagcagagcaaacaggtttttcga
ggtatggcagcattaatgcgtgctgaagccaatcctgtgcaactcgcctctcaatggcaa
gcgtttgatctgatttctgtgttacatcaattacaagccatgatacaaaccaaactggct
tcactgttagatggaaaagagcagctagaatcccatctcctcaagcattattgggctatt
tcagattgcatcatccatacaatgaagttactatcctctcagaataacctaaataaaacc
ttacttttagaagatttgatggtgtcgattatgcaacatgcacgtcagattcagcagcat
caacaataa
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