Mycolicibacterium madagascariense: MMAD_10850
Help
Entry
MMAD_10850 CDS
T06841
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmag
Mycolicibacterium madagascariense
Pathway
mmag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMAD_10850 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmag03021
]
MMAD_10850 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmag03400
]
MMAD_10850 (rpoC)
Enzymes [BR:
mmag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMAD_10850 (rpoC)
Transcription machinery [BR:
mmag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMAD_10850 (rpoC)
DNA repair and recombination proteins [BR:
mmag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMAD_10850 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBZ26790
UniProt:
A0A7I7XC02
LinkDB
All DBs
Position
1152016..1155966
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDTEQRHNDLSTLEAEMVVEKKAVEDQRDLDLAERSQKLEAD
MAELERDGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEVWTTFVKLAPKQLIVDEVL
YREIIDRYGEYFTGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQMNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFFLTTEIEGDKGEYV
PAANDQPETGVFSSPAEAIMAMDRETLSVRAKIKVRLTHLRPPADVEAAQFPDGWKMGDA
WLAETTLGRVLFNELLPRGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPNKAQILDAYEQQADAIEKKYQRGLLEKIERTDALVKIWKEA
TEEVGNALREHYPSTNSIITLIDSGATGTFNQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHSARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIMTTI
ATLEADGTLTRDAHVETSTYARTLAVDAIDANGNVVVERGHDLGDPAIDALLAAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFKQEGGV
GEDITGGLPRVQELFEARVPRNTAPIADVTGRVNIEVGDKFYKMTIVPDDGGEEVVYDKL
TRRQRLKVFKHEDGSERLLADGDHVEVGQQLMEGSANPHEVLRVQGPREVQIHLVKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFESENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGKLIPA
GTGISRYRNITVQPTEEARAAAYTIPSYEDQYYSPDFGQGSGQAVPLDDYGFSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcattggcctcgccactgcggacgacatc
cgcaactggtcctacggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgtgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgcgagcggatgggccacatcgaactggccgcgccc
gtcacgcacatctggtacttcaagggcgttccctcgcgcttgggctacctgctggacctc
gccccgaaggatctcgagaagatcatctacttcgcggcgtacgtgatcacctcggtcgac
accgagcagcgccacaacgacctgtcgacgctcgaggccgagatggtcgtcgagaagaag
gccgtggaggaccagcgcgatctggacctcgccgagcggagccagaagctcgaggccgac
atggccgagctcgagcgcgacggcgccaagtccgacgtccgccgcaaggtgcgcgacggt
ggcgagcgcgagatgcgtcagctccgcgaccgggcccagcgcgagctggaccgcctggac
gaggtgtggacgacgttcgtgaagctggctcccaagcagctgatcgtcgacgaggtgctc
taccgcgagatcatcgaccgctacggcgagtacttcaccggagcgatgggtgcggagtcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagagcctgcgcgacacc
atcaagaacggcaagggtcagaagaagcttcgcgccctcaagcgactgaaggtcgtcgcc
gcgttccagatgaaccgcaactcgccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtccgtcgacgca
ctgttcgacaacgggcgtcgtggccgtccggtcaccgggccgggcaaccgtccgctgaag
tcgctgtcggatctgttgaagggcaagcagggtcggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcactcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgtcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatctccgagcaccccgtgctgctgaaccgc
gcgcccacgctgcaccggttgggcatccaggccttcgagccacagttggtcgaaggcaag
gccattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcgcaggccgaggcgcgcatcttgatgctg
tcgagcaacaacatcctgtctcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgacgggtctgttcttcctgaccaccgagatcgagggcgacaagggcgaatacgtc
cccgccgccaacgatcagccggagaccggtgtgttcagctcgcccgccgaggccatcatg
gccatggaccgggagacgctgtcggtgcgcgccaagatcaaggttcggctgacgcacctg
cgtccgccggccgacgtcgaggctgcgcagttcccggacggctggaagatgggcgacgcc
tggttggcggagaccaccctgggtcgcgtgctcttcaacgagctgctgccgcggggctac
ccgttcgtcaacaagcagatgcacaagaaggtccaggcgtcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
cactgggccacccgctcgggtgtcacggtgtccatggccgacgtgctggtgccgccgaac
aaggcgcagatcctcgacgcctacgagcagcaggccgacgcgatcgagaagaagtaccag
cgtggcctcctggagaagatcgaacgcaccgacgcgttggtgaagatctggaaggaagcc
accgaagaggtcggcaacgcgttgcgggagcactacccgtcgacgaactcgatcatcacg
ctgatcgactccggcgccacgggtaccttcaaccagacccgtacgttggccggcatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgcccgatcaagtcgtccttccgc
gagggcctgaccgtgttggagtacttcatcaacacgcacagcgcccgaaagggtctggcg
gacaccgctcttcgtacggcggactcgggttacctgacccgtcgtctggtcgacgtgtct
caggacgtcatcgtgcgcgagcacgattgcgagaccgagcgcggcatcatgacgacgatc
gcgacgctggaggccgatggcaccctcacccgcgacgcgcacgtcgagacctcgacgtac
gcgcggacgctggccgtggacgcgatcgacgccaacggcaacgtggtggtcgagcgtgga
cacgacctgggcgacccggcgatcgacgcgctgctcgctgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccacgggcaccggcgtgtgcgccacctgctacggccgt
tcgatggccaccggcaagctggtcgacatcggtgaggccgtcggcatcgtcgccgcgcag
tccatcggtgagcccggcacgcagctgaccatgcgtaccttcaagcaggagggtggcgtc
ggtgaggacatcaccggcggtctgcctcgcgtgcaggagctgttcgaggcccgcgtgccc
cgcaacaccgctccgatcgcggacgtcaccggtcgggtcaacatcgaagtgggcgacaag
ttctacaagatgacgatcgtgccggacgacggtggcgaagaagtcgtgtacgacaagctc
acccgccgtcagcgcctgaaggtgttcaagcacgaggacggctcggagcgcctgctcgcc
gatggtgaccacgtcgaggtcggccagcagctcatggagggctcggccaatccgcacgag
gtgttgcgcgtccagggtccccgcgaggtgcagatccacctcgtcaaggaggtccaggag
gtgtaccgcgctcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcggcag
atgctgcgtcgcgtgacgatcatcgactcgggttccacggaattcctgcccggttcgctc
accgagcgtgccgagttcgagtccgagaaccgtcgcgtcgtggccgagggtggcgagccc
gcggccggtcgtccggtgctgatgggtatcacgaaggcatcgctggccacggattcgtgg
ctgtcggcggcgtcgttccaggagaccacgcgagtcctgaccgatgcggcgatcaactgc
cgcagcgacaggctcaacggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggcatcagccgctaccgcaacatcacggtgcagccgaccgaggaggctcgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagccccgacttcggtcagggc
tccggccaggccgtgccgctggacgattacggattcagcgactaccggtaa
DBGET
integrated database retrieval system
