Methylocaldum marinum: sS8_0085
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Entry
sS8_0085 CDS
T05638
Name
(GenBank) rtcb protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmai
Methylocaldum marinum
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmai03016
]
sS8_0085
Enzymes [BR:
mmai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
sS8_0085
Transfer RNA biogenesis [BR:
mmai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
sS8_0085
Prokaryotic type
tRNA splicing ligases
sS8_0085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBA32054
UniProt:
A0A286T5Q3
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All DBs
Position
81576..82796
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AA seq
406 aa
AA seq
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MNQENYEVIQPADGRHIKLWTRGVPVEDDAKTQVCNLARLPFIFSHLAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMIAARTSLSAADLPDNLAGWRAAIEKAVPHGRTPGNR
DRGAWSNPPADVDAVWAELEPDFRRIVEKHPKLARTNNRNHLGTLGTGNHFIEVCLDEAD
KVWLMLHSGSRGVGNAIGSYFIELAKEDMRRYFINLPDADLAYFPQGTEHFRDYVEAVEW
AQSYARLNRALMMKHVVEAVRGVMAKPFEAEVEAVNCHHNYVQREHHFGKNILVTRKGAV
SARDGELGIIPGSMGARSYIVRGKGEEQSFCSCSHGAGRMMSRSEAKRRFTVADQARATE
GVECRKDAEVIDEIPMAYKDIDAVMRAQADLVEIVHTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaaactacgaagtcattcagccggctgatggccggcacatcaagctgtgg
acccgaggcgtgccggtcgaggacgacgccaagacacaggtgtgcaacctcgcccggttg
ccgttcatcttcagccatctggcggtgatgccggacgtccatttgggaaagggctcgacc
atcggcagcgtgatcccgactctgggtgccgtcattccggcggcggtcggggtggatatc
ggctgcgggatgatcgcggcgcgtacttcgctgagcgccgccgacctgccggacaacctg
gcgggctggcgcgccgccatcgagaaggccgtgccgcacggcaggacgcccggtaaccgc
gaccgcggcgcctggagcaacccgccggcggacgtcgacgcggtgtgggcggagctggaa
ccggacttccggcgcatcgtcgaaaagcacccgaagctggccaggaccaacaaccgtaac
cacctggggacgctcggaaccggcaaccacttcatcgaagtctgcctggacgaggccgat
aaggtctggctcatgctgcactcggggtcgcgcggggtcggcaacgctatcggcagctat
ttcatcgagctggcgaaagaagacatgcggcgctatttcatcaacctgcccgatgcggac
ctggcctattttccgcaaggcacggagcatttccgcgactacgtggaggcggtcgaatgg
gcgcagagctacgcccggctgaaccgcgcgctgatgatgaagcacgtggtcgaagccgtg
cgcggggtaatggcaaagccgttcgaagcggaagtcgaggcggtgaattgccaccataat
tacgtacagcgcgagcaccacttcggaaagaacatcctagtgacccgcaagggcgcggtt
tcggcgcgggacggcgaactcggcatcatcccgggttccatgggcgcgcgctcctacatc
gtgcgcggcaagggcgaggagcaatccttctgctcgtgcagccacggtgccggacggatg
atgtcgcgttccgaggcgaagcggcgtttcaccgtggccgatcaggccagggccaccgag
ggcgtcgagtgccgcaaagatgccgaggtgatcgacgagattcccatggcgtacaaggat
atcgacgcggtgatgcgagcccaggcggatttggtggagatcgtgcacaccctgaagcag
gtggtgtgcgtgaaaggatag
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