Methylocaldum marinum: sS8_0534
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Entry
sS8_0534 CDS
T05638
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
sS8_0534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmai03400
]
sS8_0534
Enzymes [BR:
mmai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
sS8_0534
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
sS8_0534
DNA repair and recombination proteins [BR:
mmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
sS8_0534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-C2HC_3
RNHCP
Motif
Other DBs
NCBI-ProteinID:
BBA32499
UniProt:
A0A250KRV5
LinkDB
All DBs
Position
complement(569420..570235)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGISPHLVGQTIRAAIIREPRLRWPVPADLPEKLEGRLIRDVGRRGKYI
LIGTEGGTLIVHLGMSGSLRIPDPDTPPRKHDHFDLVLASGTRLRFHDPRRFGCVVWTEA
DPATHPLLAELGPEPLNEHFDAPYLHGKARSRSAPVKSFIMDSRIVVGVGNIYTNEALFR
AGIDPRRQAGRIALVRYEKLVASIRAVLAEAIEQGGTTLRDFVNENGRPGYFQQTLQIYG
RSGELCRRCGGPVRTERLGQRSTYWCPKCQH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgccggaagtcgaaaccacccggcgaggcatttcgcctcatcttgtcggt
cagaccatccgggcagcgatcattcgcgagccgcggctgcgctggccggttccggcggac
cttcccgagaagctcgaaggccgcttgatccgcgacgtcggacgccggggtaaatacatc
ctgatcggcaccgaaggcggaacgctgatcgttcatttgggcatgtccggaagccttcgc
attccggatcccgacaccccgccccgaaagcacgatcacttcgacctcgtgctcgccagc
ggcacccgtctccggtttcacgatccgcgccgtttcggctgcgtggtgtggaccgaagcc
gatcccgcaactcaccccctcctcgccgaactcggtccggagcccctgaacgagcacttc
gacgcgccctatcttcacggcaaagcccggagccgaagcgcgccggtcaaatccttcatc
atggacagccgcattgtggtcggcgtgggcaatatctacaccaacgaagccttgttccgg
gccggcatcgatccgcgccggcaagccggccggattgccctcgtccgctacgaaaaactg
gtcgcctccatacgcgcggttcttgccgaagcgatcgagcaaggcggaaccacgcttcgc
gacttcgtcaacgagaacggaagacccgggtattttcagcagaccctgcaaatatacggc
cgcagcggcgaactgtgccgccgctgcggcgggcccgtccgtaccgaacgcttgggacag
cgctcaacttattggtgcccaaagtgtcaacattga
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