KEGG   Methylocaldum marinum: sS8_2202
Entry
sS8_2202          CDS       T05638                                 
Name
(GenBank) DEAD/H box helicase domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
mmai  Methylocaldum marinum
Brite
KEGG Orthology (KO) [BR:mmai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmai03400]
    sS8_2202
Enzymes [BR:mmai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     sS8_2202
    5.6.2.6  RNA 3'-5' helicase
     sS8_2202
DNA repair and recombination proteins [BR:mmai03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    sS8_2202
SSDB
Motif
Pfam: DEAD_assoc DEAD WHD_Lhr WHD_4th_Lhr WHD_3rd_Lhr Helicase_C ResIII AAA_25 PhoH TraG-D_C
Other DBs
NCBI-ProteinID: BBA34154
UniProt: A0A250KRH7
LinkDB
Position
2451297..2455775
AA seq 1492 aa
MILERFHPAVSAWFRETFPAPSECQTQAWDAIKSGRHTLIAAPTGSGKTLAAFLAAIDDL
VREGEIFGLPEQTRVLYISPLKALSNDIHKNLEAPLDGINAKLFELGSTDVAIRSQVRTG
DTPALARAAMNKHPPHILVTTPESVYILLTSEGGRRLLKNVRTVIVDEIHAMVGSKRGSH
LALSLERLERLVEHRLTRIGLSATQNPIEAVAEFLTGGPECRIIDTGHRRRLDLAIELPD
SPLEAVLSQEAAKEIYDRMTALIEAHKTTLIFVNTRRLAERVARALSDRLGEEHVTSHHG
SLSREQRLSAEHRLKTGKLKALVATASLELGIDVGDVDLVCQLGTTGSIATFLQRVGRSG
HFAGGLPKGRLFPSSRDDLIECIALIDAVRRGELDRLVMPQKPVDVLAQQIVAMVAAEDW
SEDELYRTVCRAFPYRELSRQAFDDIVKMLAEGFSTRRGPRGAYLHRDGIHKRLRARRGA
RLTAMTCGGAIPDTAEYRVILEPSGEFIGTVDEDFAIESLAGDIFQLGNASWRVLRLEGG
TLRVEDARHQPPNIPFWFGEAPGRTHELSYAVSRLRREIEERLESPPNASMSGQGIDKTR
IENGPSSLAPPSPSGNGSKSSFLPLEEEIEMRDCPFPTYLPDQSLNLPATRAFLENEVGI
SPSAALQAVNYLAAAKLTLGTLPTLDTLVFERFFDESGGMQFIIHAPYGNRVNRGWGLAL
RKRFCRTFNFELQAAATENAIILSLGVSQSFPLEDVTRFLNINTVRDILVQALLAAPMFT
VRWRWNAVCSLALKRFQGGRKTPPYLLRMQAEDLVTSVFPDQLACFENIVGDREVPDHPL
VNQTVHDCLSEAMDIDRLIEVIGGIESGTIRVVCRDLTEPSPLAAEIVNSKVYSFLDDAP
LEERRTRAVAGRRWLDPSEAADLGRLDQAAIDRVRQEAWPEAADADELHDALQMLGYLRQ
TEAAIGWEGFFQELKRHGRVADIYLPNDRVLWLTAERLPQFRAIYPEADGPSSVRIRYAA
QLPPEYLEQSWTAEDALKDILRARIDCVGPVTAAELAEALALPVGRIEYALLALQNEGCA
LRGSYTPGAGTEEWCERRLLARIHRYTINRLRQEIEPVPSADFMRFLFRWQHLHPESRMQ
GAQALAAVLAQLEGFEAAAVAWEGDVLPARIADYDPAWLDALCLSGKIVWTRLSAAKGGQ
GPVKSSPMALVARRHLPYWRQFAARCDAPEPSPAARHVADILQTRGALFFEELGQWAGLL
PTQLENALAELVARGWVASDSFMGLRALLIPEQKKQCYRGLSFGMAEAGRWTLVQPPLLV
DENPSASADQEAVEHIAGMLLKRYGVVFRALLARETIAPPWQDLLRIYRRLEARGEIRGG
RFVAGHFGEQFALPEAVEVLRTVRKEKDTETLVTLSAVDPLNLVGIVTPGAKIPALPGNR
VLFRGGIPTALHAGKETQFLVSVEKHREWEFKNRLRQRTIPPQLRAYLGSAS
NT seq 4479 nt   +upstreamnt  +downstreamnt
atgattctcgaacgctttcaccccgctgtttcggcctggttcagggagactttccccgct
ccgtcggaatgccagacccaagcctgggatgccatcaaatccggtcggcacacgctgatc
gccgcgcccaccggttccggaaagaccctggcggcgtttttggccgccatcgacgacctg
gtccgggaaggcgaaatcttcggtttgccggaacagacccgcgtactctacatctcgccg
ctcaaggcgctgagcaacgatatccacaagaacctcgaagcgccgctggacgggatcaac
gccaagctgttcgaactcggctccaccgatgtggcgatccgctcgcaggtccgaaccggc
gacaccccggcattggcccgcgcggccatgaacaaacacccgccgcatatactggtgacc
acgccggagtccgtttatatcctgctcaccagcgaaggcggccgccgtctgctgaaaaac
gtgcgcacggtgatcgtcgacgaaatccatgcgatggtcggcagcaaacgcgggtcgcac
ctggccttgtcgctggagcggctggaacgtctggtcgaacaccggctcacccgcatcggc
ctgtccgcgactcagaatcccatcgaagcggtggccgagttcctgaccggcgggcccgag
tgccgtatcatcgacaccggtcaccggcgccggctcgaccttgctatcgaactgcccgat
tcgccgctggaggcggtgctgtcccaggaagcggccaaggaaatctacgaccgcatgacg
gcattgatcgaggcgcacaagaccacgctgatcttcgtcaacacccgccgcctggcggaa
cgggtggcgcgcgccctgagcgaccgactgggagaggaacacgtcacctcgcaccacggc
agcctgtcgcgggagcaacggctatccgccgaacaccggctgaagaccggcaagctgaag
gcgctggtcgccacggcctccctggagctcggtatcgacgtcggcgacgtggacctggtc
tgccaattgggcaccaccggctcgatcgccaccttcctgcaacgggtcggacgttccgga
catttcgccggaggcttgcccaagggccgcctgtttccgtccagccgggacgatctcatc
gaatgcattgccctgatcgacgccgtacggcgcggtgaactggatcgcctggtcatgccg
cagaagccggtggatgtcctggcccagcagatcgtcgcgatggtggccgcggaggactgg
tccgaggacgagctttaccgcaccgtgtgccgcgcgtttccctaccgggagctgagccgg
caggcgttcgacgatatcgtgaagatgctggcggaaggcttcagtacccggcgcggaccg
cgcggcgcctatctgcatcgggacggcatccacaagcgcctgcgcgcccgccgtggtgcg
cgcctcaccgccatgacctgcggcggggcgattccggacactgccgaatatcgtgtgatc
ctggaaccctccggagaattcataggtaccgtggacgaagatttcgccatcgagagcctg
gccggcgatatattccagctcggcaacgcgagctggcgggtcttgcggctcgaaggcggc
accttgcgcgtcgaggatgcccgccaccagccgccgaatattccgttctggttcggcgag
gcacccgggcggactcatgaattgtcttacgcggtatctcggttacggcgggaaatcgag
gaacggctggaatcgccgcccaatgcaagcatgtcaggccagggtatcgacaaaacccgc
atcgagaacggcccctcctccctcgcgccaccctctccctccggaaacggatccaagagt
tcttttctccccctggaagaagagatagagatgagggattgcccttttccgacctacttg
ccggatcaaagcctgaacctccccgccacccgcgcattcctcgaaaatgaagtcggcata
tcgccgtcggcggcattgcaggccgtcaactatctggccgcggccaagctgaccctgggc
accctgcccaccttggacaccctggtgttcgaacgcttcttcgacgaatcgggcggcatg
cagttcatcattcacgcgccctacggcaaccgggtcaatcgcggctggggcctggccctg
cgcaagcgcttctgccgcactttcaacttcgagttgcaggccgccgccaccgaaaacgcc
atcatcctgtccctgggcgtctcgcaaagctttccattggaggacgtcacccgctttctg
aacattaacacggtgcgcgacatcctggtgcaagcgctgctcgcggctcccatgttcacc
gtgcgctggcgctggaacgccgtctgctcgctggcgctcaagcgtttccagggcggccgg
aaaacgcccccgtatctcctccgcatgcaggcggaggacctcgtcaccagcgtatttccc
gaccaactcgcctgtttcgagaatatcgtcggcgaccgggaagtccccgaccatcctctg
gtcaaccagaccgtgcacgattgcctgagcgaagccatggacatcgatcgcttgatcgag
gtcatcggcggcatcgagtccggaacgatccgcgtggtatgccgcgacctgaccgagcct
tcgccgctcgccgccgaaatcgtcaattccaaggtttacagcttcctcgacgacgccccc
ctggaagagcgccggacccgcgcggtggccggccgccgctggctcgatccatctgaagcc
gcggacctcggccgtctcgaccaggcggccatcgaccgggtgcggcaggaagcctggccc
gaagcggccgacgccgacgaactgcacgatgccttgcagatgctgggttatctccggcaa
accgaggccgcgatcggctgggaaggattttttcaggaactgaaacgccatggacgcgtg
gccgacatatatctgccgaacgaccgggttctctggctcacagccgaacgcttgccccaa
ttccgcgcgatttatcctgaagccgacggcccctcgtccgtccgcatccgttatgccgca
caactgccgccggaatatctggagcagagctggaccgcggaggacgcactgaaagacatc
ctccgcgcccgcatcgattgcgtcggaccggtcaccgcggcggaactggcggaagccctg
gcgcttcccgtcggccgtatcgaatacgctctcctggcgctgcagaacgaaggttgcgcc
ctgcgcggctcgtatacccctggagccggcacggaagaatggtgcgaaagacgccttctg
gcgcgcatccaccgctacaccatcaaccgtctgcgccaggaaatcgagccggtgcccagc
gccgatttcatgcgtttcctgttccgctggcagcacctgcatcccgaaagccgcatgcag
ggcgcgcaagcgctcgcggcggtcctggctcagctggaaggcttcgaggcggccgcggtc
gcctgggagggcgatgtgctgccggcgcgaattgccgattacgatcctgcctggctcgac
gccctgtgtctttcgggaaagatcgtctggacccggctttccgccgccaaaggcggacaa
ggaccggtcaaatcctcgcccatggcgctcgtcgcccggcgtcacctaccctactggcgg
cagttcgccgcgcggtgcgacgcccctgaaccgtcgcccgccgcacggcacgtagcagac
atcctgcaaacccgcggcgctctctttttcgaagagctggggcagtgggcggggctgctg
ccgacgcaactggaaaacgcgctggcggagctggtggcgcgcgggtgggtcgcctcggac
agtttcatgggtctgcgcgccttgctgatccccgaacaaaaaaagcagtgctatcggggg
ctttccttcggaatggcggaagccgggcgctggaccctcgtgcagccgcccttgctagtc
gatgaaaatccgtccgcgtcggccgatcaggaagccgtcgagcacatcgccggcatgctg
ctcaagcgctatggcgtcgtgtttcgggcgttgctcgcccgcgagaccatcgcgccgccc
tggcaggatctcctgcgcatttaccggcgtctggaagcgcgcggcgaaatacgcggaggc
cgcttcgtggccggccatttcggcgagcaattcgccttgcccgaagccgtggaggtactg
cgtacggtgcgcaaggagaaggataccgaaaccctggtcacgctcagcgccgtcgatccg
ctcaacctcgtgggcatcgtcacgcccggcgcgaaaatccccgccctccccggcaatcgg
gtcctgttccggggcggcatcccgaccgccctgcacgccggcaaggaaacgcaattcctg
gtttcggtggaaaagcacagagaatgggaattcaagaaccggctgaggcaacgaaccatc
ccgccgcaactgcgggcttatctgggctcggcatcttag

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