Methylocaldum marinum: sS8_4293
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Entry
sS8_4293 CDS
T05638
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sS8_4293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmai03019
]
sS8_4293
03400 DNA repair and recombination proteins [BR:
mmai03400
]
sS8_4293
Enzymes [BR:
mmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
sS8_4293
Messenger RNA biogenesis [BR:
mmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sS8_4293
DNA repair and recombination proteins [BR:
mmai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
sS8_4293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
ResIII
Motif
Other DBs
NCBI-ProteinID:
BBA36223
UniProt:
A0A250KX33
LinkDB
All DBs
Position
4654130..4659340
Genome browser
AA seq
1736 aa
AA seq
DB search
MVSDNVYYTGVRRRIQAWNERMAQQSPKTSFRPKALCLDIETTVGAEVKLTKIGAWRADT
GQQAHFQGSYAIVELRAELDRLSAGAAFLLGHNITGHDLPVLKSLFPDLALLGLPVVDTL
WLSPLAFPQNPYHSLVKDYKLVKDSRNDPLKDAQLSFRLFGDQMDAFEQLQVQSPEELAC
YHYLLAKVPGADYDRLFSVVREAPKPRLEEVRRFLPNLAGPKVCATRLRRLLTEDLDQAD
SHLPLAYVLAWLRVSGGNSVLPPWVLYQVPGTRELIRELRDTACGRSDCAYCSRYHDARA
ELERFFNFPAFRAEPRNAAGGSLQEDIVKAGMAREHLLAILPTGGGKSLCYQLPALSRYW
RDGSLTIIVSPLQSLMKDQVDNLIRQGIFCGAALNGLLSMPERKDVLEKVRLGDIGLLLV
SPEQFRNRGFTEVIKHRQIGAWVFDEAHCLSKWGHDFRTDYLYVSRFIREHYGDPLAPIN
CFTATAKLDVMQDLESHYREGLGITLRHFEGGHERTNLHFEVLPVKKAEKFPLIHTLLEK
ELKEEQGGAVVFTARRASAEEIAGFLKDMGWVCAHFHAGLDPGLKKDVQKAFIDGELRVI
VATNAFGMGVDKPDVRVVIHAEIPGSLENYLQEAGRAGRDRDDARCVLLYDEEDVETQFS
LAARSRLTRQDIAEILKVLRRRSKRIKSEKVVVTPGEILTEDAVETAIEVESPDADTKVK
TAIAWLERRRFLERDENHTRVFPASLKVASLDEVEKRLRKANLSEEVRKKYLNLVAIILN
ADADEGISTDTLMVESGLSSDECIRILHQLEELQVLSNDIGMTVLLRKGVKDSSQDRLQR
VTRLEAGLLDLLPELAPDADQEDWQDMHLRQLCQELRQRTECELLPDELLTLLRTMSRAF
GESQAMRAMFEVRVVKRDYLRVRLRRSWAQIREIAAKRRDIAQSLLLHFLGRLPSDLKGV
DLRVECRMGELTRVLKEDLVLAGRLKNVTAALEQGLLYLHDNHVLILDRGRTVFRSAMTL
RLLPEDAKRRFVQSDYEPLWEHYREKNFQVHVIQEYARKGLDKLGDALAYVAAYFSWPKT
RFIREYFANRREILDLATTEESYRRIVSELRHPVQERLVSEKTDVNRLILAGPGSGKTRV
IVHRVAYLLRVSRVPPDSVIVLTFNRAAAYEVRRRLYALVGNDAYGVTVLTYHALALRLT
GTSLAAAAEAGQEIVFDEILQRAIDLLEGNAEIGDDPDELRERLLHGYRFVLVDEYQDSD
ALQYRLIGALTGRTLKDRDAKLTILAVGDDDQNIYAFRQANVEFIRRFAADYEAETEYLI
ENYRSTAHIISAANTVIQGSPERLKADYPIRIDHARRDQPGGGRWERLDPVAKGRLHILV
VPPDRNRETQVAMRELERLKALAPNADWSDFAVLGRTHAALEPVRAYCEWAGIPYRLAET
RQAGGQPELHQTREGRSLIQLLRAHKRKLLRNGALREWLRKRFDRSADNPWLELLEHCIL
ELEDAWRGVPIPVGQVLDWIYEYGSESRHRAAGRITLTTVHAAKGREFKHVLILDGDDWR
NGEPGEERRLYYVAMTRARETLTLCEAAARPNPFSRALEDDEFIVRTPPAELPEPQAALN
KIHVQLGLAHVDLGFAGRKPVADPVHRAIAMLKVGDPLHLARLDDRWVFKNRRGLIVGRL
SQKFEMPAGEIEDVRISAIVHRSKRQCRGTEWESYCQVETWEVVLCRISIWPGGSV
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
gtggtttccgataatgtctattatactggcgttagaaggcgaattcaggcgtggaacgaa
cgcatggcgcaacagtccccaaaaacctccttccgccccaaagccctgtgcctcgacatc
gaaaccacggtcggcgccgaggtcaagcttaccaagattggcgcgtggcgtgccgatacc
ggccaacaggcccattttcaaggctcgtatgcgatcgtcgagctgcgggcggagttggac
cggctgagcgccggcgcggccttcctgctgggccacaatatcaccgggcacgatctgccg
gttctgaagtcgctcttccccgatctcgcgctgttggggcttcccgtcgtggatacgctc
tggctctcgccgctcgctttcccgcagaacccgtatcacagcctggtcaaggactacaag
ctcgtcaaggattccaggaacgatccgctcaaggacgcccagttgagctttcggctgttc
ggcgaccaaatggacgcgttcgagcagctccaggtccagagccccgaggaactcgcctgt
taccactatctgctggcgaaggttccgggtgccgactacgaccgcctgttttccgtcgtg
agagaggcgccgaaaccgcggctcgaagaggtacgccgttttcttccgaacctcgccggc
cccaaggtctgtgccacgcgcctccggcggctgctcaccgaggatctcgatcaggccgac
agccacttgcctttggcctatgtcctcgcctggctgcgcgtatcgggcggcaattccgtt
ctgccgccttgggtcctgtatcaggttcccggaacccgcgaactcatccgggagcttagg
gacacggcctgcggccgaagcgactgcgcgtattgcagccggtatcacgatgcccgagcc
gaactcgaacgcttcttcaacttcccggccttccgagccgaaccccgaaatgccgccggc
ggatcgctgcaggaagacatcgtgaaggccggcatggcgcgggaacacctgctcgcgatt
ctgccgaccggcggcggcaaatccctttgttaccaactgcccgcgctgtcgagatactgg
cgagacggcagccttaccatcatcgtctcgccgctccagtccctgatgaaggatcaggtc
gacaacctgatcaggcagggcatcttttgtggcgccgccctgaacggcttgctgtccatg
cccgagcgcaaggacgtcctggaaaaggttcggctcggggacatcggcctactcctggtg
tcgcccgaacagttccgtaatcgcggcttcacggaagtgatcaaacaccggcagatcggt
gcctgggtattcgacgaggcccattgcctctcgaaatgggggcacgattttcggacggat
tatctctacgtctcgcgcttcatccgcgagcattacggggacccgctcgcgcccatcaac
tgcttcacggccaccgcaaaactggacgtcatgcaggatctcgaatcgcattatcgcgag
ggcctcggcattacgctgcggcacttcgaaggcgggcacgagcgcacgaaccttcatttc
gaagtcctgccggtcaagaaggccgagaaatttccgttgatccacaccctgcttgaaaaa
gaactcaaagaggagcagggcggggccgtggtgttcaccgcgaggcgcgccagcgcggaa
gaaatcgccggctttctgaaggacatgggctgggtgtgtgcgcattttcacgcagggctc
gaccccggtctcaagaaggacgtccagaaagccttcatcgacggcgaactgcgcgtgatc
gtcgccaccaacgccttcggcatgggcgtcgacaagccggatgttcgggtcgtgatccat
gcggaaataccgggctccctggaaaactacctgcaggaagcggggcgcgcgggacgggac
cgggacgacgcccgctgcgttctcctctacgacgaagaggatgtcgagacccagttttcc
ctggccgcccgctcgcgcctgacgcggcaggacattgccgaaatcctcaaggtcttgcgc
cggcgctcgaagcggatcaaatcggaaaaggtggtggtgacgccgggcgagatcctgacc
gaggacgccgtggagaccgcgatcgaggtggagagcccggacgccgacaccaaggtgaag
accgccatcgcctggctggagcgccgccggtttctggagcgggacgaaaaccatacgcgc
gtcttcccggcaagtctgaaagtcgcctccctcgacgaggtcgaaaaacggctgcgtaag
gccaatctctcagaagaggttcggaagaaatacctgaatctggttgcaatcattctgaac
gccgacgcggacgaaggcatcagcaccgatacgctgatggtcgagagcgggctttccagc
gacgagtgcatacggatcctgcatcaattggaagagttgcaggtcctatcgaacgatatc
ggcatgacggtgctgctgcggaaaggcgtgaaggattcgtcccaggatcgattgcagcgt
gtgactcgactggaggccggactcctggatctgctgccggagctggcgccggatgcggac
caggaagactggcaggacatgcacctgcgccagctgtgccaggagttgagacagcgcacc
gagtgcgagctgctgccggacgagcttctgaccttgctgcggaccatgagccgagctttc
ggcgagtcgcaggcgatgcgcgccatgttcgaggtgcgcgtggtgaaacgggattatctc
cgcgtccggctccggcggtcctgggcgcagattcgggagatcgccgcgaagcgccgggat
atcgcccagagcctgctgctacattttctcgggcgtctcccgtcggacctcaaaggcgtc
gatctccgggtcgaatgccgtatgggcgaactcacccgggtgctcaaggaggacctggtt
ttagccggacgcttgaaaaatgtcaccgccgcgctggagcaggggctgctttatctccac
gacaatcacgtattgatcctcgatcgcggcaggacggtgttccgctccgcgatgacccta
cgcctgcttccggaagatgcgaagcgccgcttcgtgcaaagcgattacgagccgctttgg
gagcattaccgggaaaagaacttccaggttcacgtgatccaggagtacgcccgcaaggga
ctggacaaactcggcgatgcgctcgcctacgtggccgcctatttcagctggcccaagacg
cgcttcatccgggaatatttcgcgaaccggcgggagatcctggacctcgcgaccacggaa
gagtcctatcgccgcatcgtctccgaacttcgtcatcccgttcaggaacgtctggtatcg
gagaagaccgatgtcaaccgcctgatcctggccggccccggttccggcaagacccgggta
atcgtccaccgggtcgcctatttgctgcgcgtgtcgagagtcccgccggacagcgtcatc
gtcctgaccttcaaccgggccgccgcctacgaggtccgccgccggctttacgctctggtt
ggcaatgatgcctacggcgtcaccgtgctgacctaccacgcgctcgcgctgcgtttgacc
ggcaccagcctggccgccgcggccgaggcgggacaggagatcgtgttcgacgagattttg
cagagggccatcgatctcctggaaggaaacgcggagatcggcgacgacccggacgaattg
cgggagcgcctgctacatggctatcggttcgtcttggtcgacgagtaccaggacagcgat
gcgctccaataccggctgatcggtgccctgaccggccggaccctcaaggaccgggacgcg
aagctgaccatcctggcggtcggcgacgacgatcagaacatctacgccttccgccaagcg
aatgtcgagttcatccgccgcttcgccgccgattacgaggccgagaccgaatatctcatc
gaaaactaccgctcgaccgcgcacatcatctcggccgcgaacaccgtcatccaggggagt
cccgagcgcctgaaagccgattaccccatccggatcgaccacgcgcgccgcgaccagccg
ggcggcggacgttgggaacggctggacccggtggcgaaaggccggcttcatattctcgtg
gttccgccggatcggaatcgggaaacccaggtcgcgatgcgcgaattggaacgcttgaag
gcgctggctcccaacgccgattggtccgatttcgcggtcctcggccgtacccatgccgcc
ctggaaccggtccgggcctattgcgagtgggccgggattccgtaccggctggccgaaacg
cgccaagccggcggccagccggagctgcaccagacccgcgaagggagaagcctcatccag
ctcttgcgcgcgcacaaacgcaaacttctgcggaacggcgccttacgcgaatggcttcga
aaacgcttcgaccggtcggcggacaacccgtggctggaactgctggaacattgcattctg
gaactcgaggatgcctggcgaggtgtgcccatcccggtcggccaggttctcgactggatc
tacgaatacggcagcgaatcccgccaccgggcggcgggacgaatcacgcttaccaccgtc
cacgctgcgaaagggcgggagtttaagcatgttctaatcctcgacggggacgattggcga
aacggtgagccgggcgaggaacgtcgtctctactacgtggccatgacccgcgcccgggaa
accctgacgctgtgcgaggcggccgcgcggccgaatcccttctcccgcgcactggaggac
gacgaatttatcgtgagaacgccgccggcggaactcccggaacctcaggccgcgttgaac
aaaatccacgtccaattgggcttggcgcatgtggatctcggattcgccggccgcaagccc
gtcgccgacccggtgcatcgggccatagccatgctcaaggtcggggatccgctccacctg
gcccggctcgatgaccgttgggttttcaagaaccggcgggggctgatcgtcggacgcctg
tcgcaaaagttcgaaatgcccgccggcgagatcgaagacgtgcgcatcagcgccatcgtg
catcgcagcaagcggcaatgccggggaaccgaatgggaaagttattgtcaggtcgaaact
tgggaggtcgtgctttgccggatttcgatctggccaggaggctcggtgtga
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integrated database retrieval system
