Methylocaldum marinum: sS8_4412
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Entry
sS8_4412 CDS
T05638
Name
(GenBank) uracil-DNA glycosylase superfamily
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
sS8_4412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmai03400
]
sS8_4412
Enzymes [BR:
mmai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
sS8_4412
DNA repair and recombination proteins [BR:
mmai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
sS8_4412
Prokaryotic type
sS8_4412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF2085
Motif
Other DBs
NCBI-ProteinID:
BBA36342
UniProt:
A0A250KXL2
LinkDB
All DBs
Position
4771790..4772458
Genome browser
AA seq
222 aa
AA seq
DB search
MSLSRPEPRVPVNERLRSLVLHQESLKSCARCAGMVGPVIVGTAVLSPVFLIGQAPGAKE
GQLGKPFAWTAGKTLFKWFAEIGISEDDFRRKVYMAAVCRCFPGKNPKGGDRVPSPQEID
HCADWLNAELNLIRPRLIIPVGKLAIGQILPADKLDRVIGLRHTLCRESSETDVIPLPHP
SGASTWHRREPGRTLLGQALRLIREHPAWGEICRNASPEVLI
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcagccgtcctgagccgcgagtgcccgtgaacgaacggctgcgctcgctggtc
cttcatcaggagtccctgaagagctgcgcccgttgtgccgggatggtcggtccggtgatc
gtggggactgccgtgctgtcgccggtgttcctgatcggccaggcaccgggcgccaaagag
gggcagctcggaaaaccgttcgcctggacggcggggaaaaccctattcaagtggttcgcc
gagatcggcataagcgaagacgattttcgccgcaaggtctatatggccgccgtatgccgc
tgttttcccggcaaaaacccgaaaggcggagatcgcgttccgtcgccgcaggagatcgat
cattgcgccgattggctgaatgccgagctgaatctgattcggcccaggctcatcattccc
gtcggcaagctggcgatcggccagattctcccagccgacaaactggatcgtgtgatcggg
cttcgccacacgctttgccgggaaagttcggagacggacgtgatacccttgcctcaccct
tccggagcttcgacatggcatcgccgggagcccggtagaaccctgctgggtcaggcattg
cgactgattcgcgagcatccggcctggggcgagatctgtcgcaatgcgagcccggaggtt
ttgatatag
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