Methylocaldum marinum: sS8_4711
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Entry
sS8_4711 CDS
T05638
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmai
Methylocaldum marinum
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmai03019
]
sS8_4711
Enzymes [BR:
mmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
sS8_4711
Messenger RNA biogenesis [BR:
mmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
sS8_4711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_19
HA2_N
T2SSE
nSTAND3
SLFN-g3_helicase
NACHT
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BBA36635
UniProt:
A0A250KYD0
LinkDB
All DBs
Position
5098418..5102320
Genome browser
AA seq
1300 aa
AA seq
DB search
MLEILEQIERNLDLCLRRDRYHLAKKLSRLQAEIRRDQTAADRLQALTDSISQSMAHRQL
RAESLPKLDYPEQLPVVERKAEILDNIRDHQVIVVCGETGSGKTTQLPKICLEAGCGVAG
YIGHTQPRRIAARTVAARIAEELNQPLGQAVGYKVRFQDHTRPESLIKLMTDGILLAETQ
HDRFLDQYDTLIVDEAHERSLNIDFLLGYLKWLLRKRRDLKLIITSATIDPERFAGHFGN
APIINVSGRTYPVDIRYRPVEVEEGDETDRAEQMAIVNAVDELWREQPGDILVFLSGERE
IRETAESLRKHHPSKCEILPLYSRLSQSEQERVFKPSGTRRIVLATNVAETSLTVPGIRS
VIDTGYARISRYSHRSKLQRLPIEKISRASANQRSGRCGRVGPGIAIRLYSEQDHFNRPE
FTDPEILRTNLAAVILQMHALRLGDISKFPFVEPPDARLIRDGLRTLQEVTALDDRGLIT
DIGRKLAKLPVDPKLGRMLLAGAEEHCLSEIAIIVAALSVPDPRERPADQASNADQKHAR
FRDENSDFLSFLKLWNEYEEQKKHLSKSKLRQWCRDNFLSYVRMSEWRDIHGQIMEVVKG
ELDLKLNQAPGEYGEIHRALLAGLLSNVCLKQEQNEYVGARGTKLFIHPGSFLFKSKPKW
IMSAEQVETTKVYARTVAKIEPGWIEKVGAHLVKQQHYDPHWERKVARAAVHERTTLFGL
VIQAGRKIPYERINPQEAREMFIRRALVHMDYDSKAPFFLHNLKLLEEADYLQHKGRRAD
LLVDEDWLFRWFDERIPQDVVNGVTFERWRKAAEARKPDILKLSRADITAKEDTSLDSKN
FPDYFQVGPLRFQLQYRFEPGHEDDGVTAMVPLHLLNQLDPEPFIWLVPGLLREKTVALI
KSLPKTLRIHFVPAPEHADRVLPMLDYGHGSFYGQLSSALKKTGGIAVSLDSFREDVLPV
HLRMNFAVVDEFKAVIDRSRDLNDLKARHSADANKNFQQLARQAYLHTGCKSWSFGELPQ
CFDGRHDGQTIYGFPATVDEGETVGVRVFDTPEEASRQQERGLVRLFRLALVKELKYLKR
NLALNAQAEFLYRQMPAHPFLYPDLKTGRELREDLLDRVMGVLFLEGQPDIRDRDEFEKR
LGDRKAEMVLKAEEMARTAQAVLQLYAEVQAKLKMRPTRPVKQNILEQLELLLYSGFWIT
TPYAQIREIPRYLKAMLHRIEKSDQDPQRDQKQFKEIELFWGRYWSAVKAARGRSVPERD
AFRWKLEEFRVSLFAQQLKTPYPVSAKRLEEAWKNTSAAT
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgctggagattcttgaacaaatcgaacgaaatctcgatctttgccttcgcagagaccgc
tatcatctggcgaagaagctttcgcgcctgcaagcagaaatacgccgagaccaaaccgct
gccgatcgactgcaggcgctgacggattcaatcagccaatccatggcacacaggcagctt
cgagctgaaagccttccgaagcttgattacccagagcagcttccggtcgtcgaaagaaaa
gcagagattctcgataatatacgggatcatcaggtgatcgtcgtttgcggagagaccggt
tccggcaaaacgacccaattgccgaaaatctgtctcgaggctggctgtggtgttgccggt
tatataggccacacccagccccgtcgtattgcggctcgaaccgtcgccgcgcggattgcc
gaggagctcaaccagcctctggggcaggcggtcggttataaggttcgatttcaagatcac
actaggcccgaaagcttgatcaagctgatgacggacggcatcctgctggccgaaactcag
cacgatcgctttctcgatcaatatgacactttgatcgtggatgaggcgcacgagcggagt
ctcaatatcgattttctgctgggctatctgaaatggttgctgcgcaagcgccgagatttg
aagctcataatcacttccgccaccatcgacccggaacgtttcgccgggcattttgggaac
gcgcccatcatcaacgtatcggggcgcacctatccggtggatattcgttatcggccggtt
gaagtcgaggagggcgatgaaaccgaccgcgccgaacagatggcgattgttaacgccgtg
gatgaactgtggcgtgagcagccgggagacatcctcgtctttctgagtggcgagcgcgaa
atccgcgagaccgcagagtcgctgcgcaagcaccacccgtcgaaatgtgaaattctgccg
ttatattcgcgcctgtctcaatccgagcaggagcgggtattcaagccttcgggtacgcgt
cgcatcgtactcgcgaccaacgtcgcggaaacatcgcttaccgtgcccggtatccgctcg
gtgatcgataccggctacgctcgtatcagtcgttacagccaccgtagcaaattgcaacgc
ctcccgatcgagaagatttcccgcgcctcggccaaccagcgctccggccgctgtggacgg
gtcggacccggaatcgcgatccgcttgtattctgaacaggatcatttcaaccggcccgaa
tttaccgatccggaaatactccgtaccaatttggcggcggtcattctgcaaatgcacgct
ctgaggctgggagatatttcgaagtttccctttgtggaaccacccgacgcccggctgatc
cgagatggtcttcggaccttgcaggaggtcactgcgctggatgaccgcgggctgatcacc
gatatcggtcgtaaactcgcaaagctgccggtagacccgaaactcgggcgtatgctattg
gccggagcggaagaacattgcctgagcgaaattgctatcatcgttgctgccctgagcgtg
ccggatccccgtgagcgccccgccgatcaggcttcgaatgccgatcagaagcatgcccgc
tttcgggatgagaattctgattttctgtccttcttaaagctatggaacgaatacgaggaa
cagaagaagcacttgtcgaaatccaagttgcgtcaatggtgtcgagacaattttctgtcc
tacgtgcggatgtcggagtggcgcgacattcatggccagatcatggaggtggtgaagggc
gaactggacctgaaactgaaccaggcgccaggtgaatacggcgaaatccatagggcgctg
cttgcgggccttctgtctaatgtctgtctcaagcaagagcagaacgaatacgtcggggcg
cggggtaccaagttgttcattcatcccggttcctttttgtttaagtccaagcctaagtgg
atcatgtcggccgagcaggtggaaacgaccaaggtctacgcccgcaccgtggccaagata
gagccgggatggatcgagaaggtcggggctcatctcgtcaagcaacaacactacgatcca
cactgggagcgcaaggtggcacgcgcggcggtgcatgagcgcacgacgctgttcggactc
gttattcaggcggggcgcaaaattccgtacgaaaggatcaatccacaggaagctcgggaa
atgtttatccgccgcgcccttgtgcacatggattacgacagcaaggctcccttcttcctg
cacaatctgaaacttttggaggaagcggattatcttcagcacaaggggcggcgggccgat
ctgctggtggacgaggactggctgttccgctggttcgacgaacgtatcccgcaggatgtg
gtcaacggcgtcaccttcgagcgttggcgcaaggcggcggaggcgcgcaagcccgatatt
ctcaagctgagccgggcagacattacagcaaaggaagacacttcgctggattctaagaat
tttccggactactttcaggtagggccgttgcggttccagttgcagtaccgattcgagccg
ggacacgaggacgacggggtaacggccatggtgccgctgcatctcctgaaccagctcgat
cccgagccgttcatctggttggtgccgggcctgctcagagaaaagaccgtcgcactcata
aagtctttgccgaagacgctgcgtatccatttcgtaccggcaccggaacatgccgaccga
gtgttgcccatgctggactacgggcatggttcgttctatgggcagctttcgtcggcgttg
aaaaagaccggaggtatcgccgtgtcacttgattctttccgagaagacgtgctgccggta
catctgcgcatgaatttcgccgtggtggacgagttcaaggccgttattgaccgttcgcgc
gatctcaacgacctcaaagcccgccattccgccgatgcaaataagaattttcaacaactg
gctcggcaggcttatcttcatacgggctgcaagagttggagtttcggggagttaccccaa
tgtttcgacgggcggcacgatggtcagacgatctatggttttccagcgacggtcgatgaa
ggcgaaacggtaggtgtacgcgtgttcgatactccggaggaagcttcgcgacagcaagaa
cggggtcttgttcggctattccggttggctttggtcaaagagctcaaatatttgaaacgg
aatctcgcactcaatgcccaggcagaattcttgtaccgacagatgccagcgcatccattc
ctttatcctgatctgaagaccggccgcgaactgcgtgaggatcttttggaccgggttatg
ggcgtattgtttttggagggacaaccagatatccgcgaccgagatgaattcgagaaacgt
cttggagaccggaaggcagaaatggtccttaaggccgaagaaatggcgcgtaccgcacaa
gccgtgctccagctgtacgccgaagtgcaggcaaagctgaagatgcggccgaccaggccc
gtcaagcagaatatactcgaacagttagaattactgctctattcgggattctggattaca
accccatacgcgcaaatcagggagatcccgcgttatctcaaagctatgctgcaccgtatc
gaaaagtccgaccaagaccctcaacgagatcaaaagcagttcaaggagattgagcttttc
tgggggcgctactggagtgccgtaaaagctgctcggggacggagcgtaccggagcgggac
gctttccgctggaagctcgaggaatttcgtgtttctttgtttgcccaacaactgaaaacg
ccgtatccggtgtcggcaaagcgcttggaagaggcgtggaaaaacacgagcgcggctacg
tag
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