Methylocaldum marinum: sS8_5334
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Entry
sS8_5334 CDS
T05638
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmai
Methylocaldum marinum
Pathway
mmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sS8_5334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmai03019
]
sS8_5334
03009 Ribosome biogenesis [BR:
mmai03009
]
sS8_5334
Enzymes [BR:
mmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
sS8_5334
Messenger RNA biogenesis [BR:
mmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sS8_5334
Ribosome biogenesis [BR:
mmai03009
]
Prokaryotic type
rRNA helicases
sS8_5334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBA37253
UniProt:
A0A250KZZ5
LinkDB
All DBs
Position
complement(5742574..5744319)
Genome browser
AA seq
581 aa
AA seq
DB search
MTSLNSATSFEQLSLSPPILQALREIGYEAPSPIQAESIPHLLEGRDLLGQAQTGTGKTA
AFAIPILSRIDLSKRVPQALVLAPTRELAIQVAEAFQTYARHLEGFHILPVYGGQGMGSQ
LRQLARGVHVIVGTPGRVMDHLRRGTLSLDHLTTLVLDEADEMLRMGFIEDVEWILEQTP
PTRQIALFSATMPTVIRKIADRHLNHAAEVKIKAKTATVEAISQQYWLVSGVQKLEALTR
ILDVEDFDAMIIFVRTKTETVELAEKLEARGYEAAALNGDMSQVLREKVIDRLKKNALDI
VVATDVAARGLDVERITHVVNYDIPYDSEAYIHRIGRTGRAGRKGKAILFVSPRERRMLR
AIEQTTRQPIPQMRLPTLQDIADRRIEQFKAQLVQTLDDEDVGFYRELVDKLISEEIGDP
ADIAAALAYLMHRERPLEAPEEPELPAFEPAREHRREKKSPEGGMLRYTIDVGREHSVQP
KDIVGAIANETGLSSRLIGQIKLFDTYSTVELPADLPDDFFKRLKKTWVRNQRLNLQLVE
DGGRQQPSKKPAKSGERKHAKPKASEQDKPAAKRRPKKAQP
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgctcaattcagcaacgtctttcgaacaattatccctctccccgcccatcctg
caggcactccgagaaatcggttacgaagccccgtcgcccatccaggccgaaagcattcca
cacctgctggaaggtcgggatctgctcggacaggctcaaaccggcaccggaaaaaccgcg
gctttcgcgattcccatattgagccggatcgatctttccaagcgcgtgccccaagcactg
gtactcgcgcctaccagggagctcgccatccaggtggcagaggcatttcaaacgtacgcc
cgacatctcgaaggttttcacattctgccggtttacggcggccagggcatgggatcgcag
ctgcggcagctggcccgcggcgttcacgtcatcgtgggtacgccgggacgggtcatggat
catctccgccgcggaaccttgtctttggatcatttgaccacactcgttctcgacgaagcc
gacgaaatgctgcgcatgggtttcatcgaggacgtcgaatggatcctggagcaaacccct
ccgactcgccagatcgcgctgttttcggccaccatgccgacagtcatacgcaaaatcgcc
gatcgtcatctcaaccatgcggcggaagtcaaaatcaaggcgaagaccgccacggtcgaa
gccatcagccagcaatactggctggtctcgggcgtacaaaagctcgaagccctgacccgc
attctcgacgtggaagacttcgatgccatgatcatcttcgttcgcaccaagaccgaaacg
gtggaattggccgaaaaactggaagcccgcggatatgaggccgcggccctgaacggggac
atgagccaggtcttgcgcgaaaaagtcatcgaccgcttgaagaagaatgccctggatatc
gtcgtggccaccgacgttgcggcccgcggattggacgtggaacgcattacccacgtggtg
aattacgatattccctacgacagcgaagcctatatccaccgcatcgggcgcaccgggcga
gccgggcgcaaaggcaaggcaatcttgttcgtttccccgcgcgagcgccgcatgctgcgc
gccatcgagcagactactcggcaacccataccgcagatgcgactgccgaccctgcaggat
atcgccgaccgtcgcatcgagcagttcaaggctcagttggtccagaccctggacgacgag
gatgtgggtttttatcgggagttggtggacaaactgatttccgaggaaatcggcgatccc
gcagacatagccgccgccctcgcgtatctcatgcaccgcgagcgtcccctggaagcgccc
gaggaaccggaacttcctgcgttcgaaccggcacgcgaacaccgtcgggaaaaaaagtcc
ccggaaggcggcatgctgcgctacaccatcgacgtcgggcgggagcacagcgtacaaccc
aaggacatcgtcggcgcgatcgcgaacgaaaccggactttcctcccggctgatcggccag
atcaagctgttcgatacctacagcacagtggagcttcctgccgatctgccggacgatttc
ttcaagcggctaaagaaaacctgggtaagaaaccagcgcctcaacttacaattggtcgag
gacggcgggcgacagcaaccaagcaagaagcccgcgaagtcaggcgaacgaaaacacgca
aaaccaaaagcctcggagcaggacaaaccggcggcaaaacgccgcccaaagaaagcccaa
ccctaa
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