Methylocaldum marinum: sS8_5553
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Entry
sS8_5553 CDS
T05638
Name
(GenBank) replication factor C subunit
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmai
Methylocaldum marinum
Brite
KEGG Orthology (KO) [BR:
mmai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmai03016
]
sS8_5553
Enzymes [BR:
mmai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
sS8_5553
Transfer RNA biogenesis [BR:
mmai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
sS8_5553
Prokaryotic type
tRNA splicing ligases
sS8_5553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBA37470
UniProt:
A0A286P498
LinkDB
All DBs
Position
complement(5962211..5963641)
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AA seq
476 aa
AA seq
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MDINRLTRLSEFAWRIEPVDGMRVPVIIYADEILLGEMDEKVREQAVNVTMLPGIVGACY
AMPDAHWGYGFPIGGVAAFAPEQGGVVSAGGVGFDISCGVRTLHTGLKREQIDPLKKTLA
DALYATVPVGVGSRGHIRLDHAQMEEMLRGGAEWAVRQGYGRSEDLERIEERGRMAGAEP
EAVSVHAKERQRPEMGTLGSGNHYLEIQEVGEIYDAAIAASFGLASGDVMVTIHCGSRGL
GHQIGTDYLKRMQAAAVQHGIVLPDRELACAPIDSPVGRDYLGAMCAAINCALANRQIIT
HLTRRVFAEILPDARLDLLYDVSHNTCKVEEHLVHGRKRQVYVHRKGATRAFGPGHPDLP
KAFRESGQPVLIGGSMGTASYILAGTASGETLSFASACHGAGRAMSRHQAVRTWGGREVV
DELAARGIIVRSPSWRGVAEEAPGAYKDVHDVVIAADRAGLARLVAQVTPMACIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaatcgcctgacgcggctatccgaatttgcctggcgcatcgaaccggtggac
ggcatgcgggtaccggtcatcatctatgccgacgaaattctgctcggcgagatggatgaa
aaagtcagagagcaggcggttaacgtcaccatgctcccgggcatcgtcggcgcatgctac
gccatgcccgacgcgcactggggctacggcttcccgatcggcggcgtggccgcgttcgcc
cccgaacagggcggggtcgtttcggccggcggcgtcggcttcgacatctcttgcggggtg
agaaccctgcacaccggactcaaacgggaacagatcgacccgctcaagaaaaccctcgcc
gatgcgctgtacgccaccgtaccggtcggcgtcggcagccgcggccatatccggctagac
cacgcgcaaatggaagagatgctgcgcggcggcgccgagtgggcggttcgccaaggttac
gggcgttccgaagatctcgagcgaatcgaagagcgcggccggatggcgggcgctgaaccg
gaagcggtatcggtacacgccaaggaacgacagcggccggaaatgggaaccctgggctcc
ggcaaccattacctcgaaatccaggaagtcggcgaaatctacgatgcggccatcgccgcg
tcgttcggcctggcgagcggagacgtgatggtcaccatccattgcggctcgcggggcctg
ggccatcagatcggaaccgattatctcaagcgcatgcaggcagccgcggtgcaacacggc
atcgtcctgcccgaccgggaactggcttgcgccccgatcgactcgccggtaggccgggac
tacctcggcgcgatgtgcgccgcgatcaactgcgcgctggcgaaccggcagatcatcacc
cacctgacccgcagggtgttcgcggaaatcctgccggatgcccggctcgatctgctttac
gatgtttcgcacaacacctgtaaagtggaagaacatctggtacacggccgaaaaaggcag
gtctacgtgcatcgcaagggcgcaacgcgcgctttcgggccgggccatcccgatctgccg
aaagcatttcgcgagagcggacagccggtcctgatcggcggttccatgggaacggcgtcc
tacatcctggccggcaccgcgagcggcgaaaccctatccttcgcctccgcctgccacggg
gccgggcgcgccatgagccgccaccaggccgtgcggacctggggcggacgggaagtggtc
gacgaactcgccgcacgcggcatcatcgtacgcagcccgtcctggcgcggagtcgccgaa
gaagcgccgggcgcctacaaagacgtccacgacgtcgtgatagccgccgatcgagccggc
ctcgcgcgcctggtcgcccaggtcacgcccatggcctgcatcaagggatga
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