Methanosarcina mangrovi: ACSAZL_14505
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Entry
ACSAZL_14505 CDS
T11673
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
mmaj Methanosarcina mangrovi
Pathway
mmaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACSAZL_14505 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaj03021
]
ACSAZL_14505 (rpoB)
Enzymes [BR:
mmaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACSAZL_14505 (rpoB)
Transcription machinery [BR:
mmaj03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
ACSAZL_14505 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DmmA-like_C
RNA_pol_Rpb2_45
DUF1451
YflT
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
XYY88071
LinkDB
All DBs
Position
3268374..3270188
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AA seq
604 aa
AA seq
DB search
MTKAKVFINGELVGTHDNPAELAEELRKMRRQGFISRQVNIALNDNTREVIINSDMGRAR
RPLVVVENGALKVTEEHIQKLKNKEITYEDLVKEGCVEYLDAEEEENAYIALYESDITPR
HTHMEIDPELMLGICTGMVPYPEHNASPRNTMGAAMIKQCIGVSTANQKLRPDTRAHVLH
YPQRALTRTRTSEAIGFDDRPAGQNFVVAILSYEGYNIEDALIFNKGSIERGLGRSHFLR
TFEGEERRYPGGQEDKFEIPDSEYRGARSAEAYANLDIDGLVNPETPVGPNDVLIGKTSP
PRFLEEPSDFGIAVEQRRESSITMRSNETGIVDTVILTESINGTRLAKVKVRDERIPDIG
DKFASRHGQKGVIGLKVPIADMPFTESGLTPDLMINPHAIPSRMTVGHVLEMIGGKVGSM
EGRRVNATAFSGENEDDLREALKKHGFAHTGKEVFYDGATGRMIPADVFVGVILYQKLHH
MVTSKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLVGHGAAMSLKERLLDESDK
VVELVCSHCGMIATYDKQRNVSFCSACGADTDIYPVEMSYAFKLLLDEIKSLGVAPRLNL
EDAV
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagcaaaagtattcataaacggagagcttgtcgggacccatgacaaccctgcg
gaactcgcagaagagctccgaaaaatgaggcggcaggggttcatatccaggcaagtcaat
atagctcttaacgacaacaccagggaagtaattattaactccgatatgggcagggcaaga
agacctctcgtggttgtggaaaacggagccctgaaggtaacggaagagcatatacagaaa
ctgaaaaacaaagaaatcacctatgaagacctggtaaaagaaggctgtgtggagtatctg
gacgcagaagaggaagaaaacgcgtacattgcactctatgagtcggacattactcccagg
cacacccatatggaaatagaccccgaacttatgcttggcatctgtaccgggatggttcct
tatccggaacacaacgcatctccgcgtaacaccatgggtgcagccatgatcaagcagtgc
atcggagtgtccacagcaaaccagaagttaagacccgatacccgtgcccacgtattgcac
tacccgcagagggcacttacaaggacaaggacttccgaagcaatcggttttgatgacaga
cccgcaggccagaacttcgtggtcgcaattctgtcttatgaagggtataacattgaagac
gctctgattttcaataagggttcgatagagagagggcttgggagaagccatttcctgagg
acctttgaaggggaagaaaggaggtatcccggcgggcaggaagacaagtttgagattccc
gactccgaataccgtggagcccgcagcgccgaagcgtatgcaaatcttgacatcgacggg
cttgtaaaccctgagaccccggtaggtcccaacgatgtgcttataggaaagacgagccct
ccgaggttcctggaagaaccttccgacttcgggattgcagttgaacagaggagagaaagc
tctattaccatgcgttccaacgaaacggggattgtggacaccgtcattctcacggaatcc
attaacggaacccgccttgcgaaagtaaaggtaagggatgagaggatcccggacatcgga
gacaagttcgcttccagacacgggcaaaaaggcgttatcggcttaaaagtccctattgct
gacatgccgtttacggaatccggcctgactccggacctgatgattaacccgcacgcaatt
ccctcccgtatgactgtaggacacgtcctggaaatgatcggcggaaaagtaggttccatg
gaaggcagaagagtgaatgcaacagccttctcaggagaaaacgaagacgaccttagagaa
gctctgaaaaagcacggttttgcccacacaggaaaagaggttttctatgacggggcaaca
ggcaggatgatccctgcagatgtcttcgttggtgtgatcctttaccagaaactgcaccac
atggtcacctccaagatgcatgccaggtcccgcgggcctgtgcaggtgctcacccgccag
ccgactgaaggtcgagcaagggaaggcggtctcaggttcggtgaaatggagcgtgacgtg
ctggtagggcacggagctgccatgtccttaaaagaaaggttgctggacgagtctgacaaa
gtggtggaacttgtctgctcgcactgcggaatgattgcaacgtacgacaagcagcggaac
gtctctttctgttcggcctgcggggcggacacggacatctaccctgttgagatgagctac
gcgttcaagctgttactggacgagattaagtccctcggggttgctcccaggcttaatctg
gaagatgcggtataa
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