Mycobacterium marseillense: CKJ54_06325
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Entry
CKJ54_06325 CDS
T05049
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmal
Mycobacterium marseillense
Pathway
mmal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKJ54_06325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmal03019
]
CKJ54_06325
03009 Ribosome biogenesis [BR:
mmal03009
]
CKJ54_06325
Enzymes [BR:
mmal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKJ54_06325
Messenger RNA biogenesis [BR:
mmal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKJ54_06325
Ribosome biogenesis [BR:
mmal03009
]
Prokaryotic type
rRNA helicases
CKJ54_06325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASW89548
UniProt:
A0AAC9VTC5
LinkDB
All DBs
Position
1283176..1284882
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AA seq
568 aa
AA seq
DB search
MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM
DALTRVLEVERFEAMIIFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVSALKD
GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQTLTETELPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE
HDTPMADIAAALALQSRDGEAFLMAPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLEQTRISGVL
INLQPDRSSAKAHGGREGGGKPRRKHGG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctcagacagctcgaccggggctgcctctacgacgtttgccgacctgcagatc
cacccctcggtgctgcgggcggtcgctgatgtcggttacgaatcacccaccggcatccag
gccgcgacgatcccggccctgatggctggctccgacgtcgtcgggctggcgcagaccggc
accggcaagaccgccgcgttcgcgatcccgatcctgtccaagatcgacgtcaccagcacc
gccacccaagccctggtgctcgccccgacccgggaactggccctgcaagtcgccgaggcg
ttcagccgctacggtgcccacctgcccaagatcaacgtgctgccgatctatggcggctcg
tcgtacagcgtgcagttggccgggctgcgtcgcggcgcccatgtggtggtcggcactccc
ggccgggtgatcgaccacctcgaacgggggacgctggacctgtcccacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaagtcgatcgcatc
ctgtccgagacccccgaatacaaacaggtggcgctgttctccgcgaccatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgatccgctcgaagtcagcaccaaagcgaaa
accgccaccgccgagaacatttcccagcgctacatccaggtcgccggcccccgcaagatg
gacgcgctgacccgcgtcctcgaagtcgagcggttcgaggcgatgatcatcttcgtcaga
accaaacaggccaccgaggaagtcgccgaaaagctcagggcgcgaggtttctccgcggcc
gccatcaacggcgacatcccgcagggccagcgcgagcggaccgtcagcgccctgaaggac
ggcagcatcgacatcctggtcgccaccgatgtggccgcgcgcgggctcgacgtcgagcgg
atctcgcacgtgctcaactacgacatcccgcatgacaccgagtcgtacgtgcaccggatc
gggcgcaccggcagggccggacgttcgggaaccgcgctgctcttcgtctccccgcgagag
cgccacctgctcaaggcgatcgaaaaggccacgcggcagacgctcaccgaaaccgagctc
cccaccgtcgaggacgtcaacgcgcagcgggtggccaagttcgcggattcgatcaccacc
gcgctcggggcccccggcatcgacctgttccgcaaactggtccaggactacgagcgcgag
cacgacaccccgatggccgacatcgccgccgcgctggccttgcaatcccgcgacggcgag
gcattcctgatggcccccgaacccccgcccgagcggcgcgagcggcgcaccgaacggcgc
gatcgtcccgaaaagccaaggtctacacggcccttcgccacgtaccgcatcgcggtgggc
aagcgccacaagatcggtccgggcgcgatcgtgggcgccatcgccaacgagggcgggctg
catcgcagcgacttcggccacatcgcgatcggaccggacttctcgctggtggagctgccg
gcgaagttgcccaagtccacattcaaaaggcttgagcagacccgtatttcgggggtgttg
atcaaccttcagccggacaggtcttccgccaaggcccacggcggccgcgaggggggcggg
aagccgcgcaggaaacacggcggatga
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