Mycobacterium marseillense: CKJ54_11540
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Entry
CKJ54_11540 CDS
T05049
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmal
Mycobacterium marseillense
Brite
KEGG Orthology (KO) [BR:
mmal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmal03019
]
CKJ54_11540 (hrpA)
Enzymes [BR:
mmal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CKJ54_11540 (hrpA)
Messenger RNA biogenesis [BR:
mmal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CKJ54_11540 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
ABC_tran
AAA_25
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ASW90433
UniProt:
A0AAC9VV29
LinkDB
All DBs
Position
complement(2459306..2463226)
Genome browser
AA seq
1306 aa
AA seq
DB search
MAEPSAAQLRRQLDGLTLRDAARLGRRLKNLRSATPEKLRRLADEIAAAQPIVAARRAAV
PSIAYPDLPVSERRQEIADAIRAHQVVVIAGETGSGKTTQLPKICLETGRGIRGTIGHTQ
PRRLAARTVAQRIADELGSPLGEAVGYSVRFTDRVSDQTLIKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIEPQRFAAHFGGAPIVEV
SGRTYPVEVRYRPLEVAVASACGDDPDDPDHEIVRTETRDEVEAIVDAVGELEAEPPGDV
LVFLSGEREIRDTAEALTSLAGGPSYTEVLPLYARLPTAEQQKVFAPHTGRRVVLATNVA
ETSLTVPGIRYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRCGRVAPGVCIRL
YSEQDFAARPRYTEPEILRTNLAAVLLQMAALQLGDIEKFPFLDPPDRRSVRDGVALLQE
LGAFDGQGAITDLGRRLARLPVDPRLGRMILQSETEGCVREMLVLAAALTIPDPRERPSD
REEAARAKHARFADEHSDFMSYLKLWRYLREQRKTLSGSAFRRMCRLEFLHYLRIREWQD
LVGQLRSIARDLGIVEDTESGEPADPARVHAALVAGLLSHMGMRREDTREYLGARNANFV
LAPGSALTKRPPRWVVVAELVETSRLYGRTAARIQPEVVERVAGDLVQRTYSEPHWDATR
GEVLAYERVTLYGLPLVARRRVGYARIEPGVARELFIRHALVEGEWQSRHHFFRDNARLR
EELEELEERARRRDLLVGDDDVYALYDARVPAEVVSARHFDAWWKRQRHKTPELLTFTRA
DLLRTDDHAGADRPTTWRTGDAVLPLTYRFEPGAADDGVTVHVPIDVLARLGGDEFAWQV
PALREELVTALIRSLPKDLRRNFVPAPDTARAVLAAIDPAGEPLLPALQRELRRRTGVLM
PVEAFDLEKLPPHLRVTFAVESADGAELARGKDLQALQERLTAPTRQAVAHTVAAELERT
GLRDWPGDLDELPRIVERAVQGRTVRGFPAFVDTGSAVDLRVFATPDEQSRAIGPGLRRL
VRFGVASPVKAIARQLDPRTRLTLGANPDGDLPALLEDCADAAADALIPAPVWTRGEFVA
LRERLGKTLAPMTTEIVRGVERVLATAQEVQLLLPATPSPAQSEAVADVRGQLDRLLPPG
FVTATGRAHLADLTRYLVAIRRRLDGLAHGVQADRERMARVHSVQDAYDELLRELPRAAT
AAADVRDIARQLEELRVSLWAQQLGTPRPVSEQRIYRAIDAVRDRR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaccatccgcagcgcagttgcgcagacagctcgacggcctgacgttgcgcgac
gccgcccgcctgggcaggcgcctgaagaacctccgctccgccacgcccgagaagctgcgg
cgcctcgccgacgagatcgcggccgcgcagccgatcgtcgcggcccggcgggccgccgtg
ccttccatcgcctatcccgacctgccggtcagcgaacggcggcaggagatcgccgacgcg
atccgggcgcatcaggtggtggtgatcgcgggggagaccgggtcgggcaaaaccacccag
ctgcccaagatctgcctcgaaaccggccgtggcatccgcggaaccatcgggcacacgcag
ccccgccggctggccgcgcgcaccgtcgcccagcgcatcgccgacgagctgggcagcccg
ctcggggaggccgtcggctacagcgtgcggttcaccgaccgggtcagcgaccagacgctg
atcaagctgatgaccgacggcatcctgctcgccgagatccagcgcgatcgccgcctgctg
cgctacgacaccctgatcctggacgaggcccacgagcggagcctgaacatcgatttcctg
ctcggctatctgcgcgaattgctgccgcgccggcccgacctgaaggtgatcatcacttcg
gcgaccatcgagccgcagcgcttcgccgcgcacttcgggggtgcgccgatcgtcgaagtg
tcggggcggacctatccggtcgaggtccgctaccggccgctagaggtcgccgtggcttcc
gcatgcggtgacgatcccgacgacccggatcacgagatcgtccgcaccgagacccgcgac
gaggtcgaggcgatcgtcgacgccgtcggtgaactcgaggccgagccgcccggcgacgtc
ctcgtcttcctctcgggcgaacgcgaaatccgcgacaccgcagaagctttgacatctttg
gcgggcggtccaagctacaccgaggtgctcccgctgtacgcccggctgcccaccgccgag
caacagaaggtgttcgccccgcataccggccggcgcgtcgtgctggcgaccaacgtcgcc
gagacgtcgttgaccgtgccgggaatccgctacgtcatcgacccgggcaatgcccggatt
tcgcgctacagccgccgcctgaaggtgcagcgcctgccgatcgagccgatctcgcaggcc
tccgccgcgcagcgagccggccggtgcggccgggtcgcccccggcgtgtgcatccggttg
tactccgagcaggacttcgcggcccggccgcgctacaccgagccggagatcctgcggacc
aacctcgccgccgtgctgctgcagatggcggcgctgcagctcggcgacatcgaaaagttc
ccgttcctggatccgccggaccggcgcagcgtccgtgacggcgtcgcgctgctgcaggaa
ctcggcgcgttcgacgggcagggcgcgatcaccgacctcggccgccgcctcgcccggctg
cccgtggacccgcggctgggccggatgatcttgcagtccgagaccgagggctgcgtgcgg
gagatgctggtgctggccgcggcgctcaccatcccggacccgcgggagcgcccgagcgac
cgcgaggaggccgcccgcgcaaagcatgcccggttcgctgacgagcactccgacttcatg
tcgtacctcaagctgtggcgctaccttcgcgaacaacgtaagacgttgtccggcagtgcg
tttcggcggatgtgccgcttagaattcctacactatctgcgcatccgcgaatggcaggac
ctggtcggccaactccgcagcatcgcccgcgacctgggcatcgtcgaggacaccgagtcc
ggcgagcccgccgatccggcccgcgtgcacgcggcgctggtcgccgggttgctgtcccat
atgggcatgcgccgcgaggacacccgcgagtatctgggcgcgcgtaacgcgaacttcgtg
ctggcgcccggctcggcgctcaccaaacggccgccgcgctgggtcgtcgtggcggagctg
gtcgagaccagccggctgtacggccgcacggctgcgcgcatccagccggaggtcgtcgag
cgggtcgccggcgacctggtgcagcgcacctacagcgagccgcattgggacgccacgcgc
ggcgaggtgctggcctacgagcgggtgacgctgtacggccttccactggtggcgcgccgc
cgcgtcggctacgcccgcatcgagccaggggtggcgcgcgagctgttcatccgccacgcc
ctggtcgaaggggagtggcagagtcggcatcacttcttccgcgacaacgcccggctgcgg
gaagaactcgaggagctcgaggagcgcgcccgccgccgcgacctgctggtcggcgacgac
gacgtctacgcgctctacgacgcccgtgtccccgccgaggtcgtctcggcgaggcatttc
gatgcgtggtggaaacgccagcggcacaagacacccgagctgctgaccttcacccgcgct
gacctgctgcgcaccgacgaccacgccggcgccgatcgcccgaccacctggcggacgggc
gatgccgtgctgccgctgacctaccggttcgagccgggggccgccgacgacggggtcacg
gtgcacgtgccgatcgacgtgctggcgcgcctggggggcgacgagttcgcctggcaggtc
cccgcgctgcgcgaggagctggtgaccgcgctcatccgttcgctgccgaaagacctgcgc
cgcaacttcgttcccgcccccgacacggcccgcgcggtgctggccgccatcgacccggcc
ggcgagccgctgctgcccgcattgcagcgcgaattacgccgccgcaccggggttttaatg
ccggtcgaggcgttcgacctggagaagctgccgccgcacctgcgggtgaccttcgcggtg
gaatccgccgacggcgccgagcttgcccgcggcaaggacctgcaggcgctgcaagagcgc
ctcacggcgccgacccggcaagcggtcgcgcacacggtcgcggccgagctcgaacgcacc
gggctgcgcgactggcccggcgatctcgacgaattgccgcgcatcgtcgaacgcgccgtg
caggggcgcaccgtgcgggggttccccgcgttcgtcgacaccggcagcgccgtcgaccta
cgcgtgttcgcgacgccggacgagcagagccgggcgatcggccccggcctgcggcggctg
gtgcggttcggcgtcgcgtccccggtgaaagccattgcacgtcaacttgatccgcgcacc
cgtctgacactcggcgccaaccccgacggcgacctgcccgcgttgctggaggactgtgcc
gacgccgcagccgacgcgctcatcccggcgccggtgtggacgcgcggggagttcgtcgcg
ctgcgagaacggctgggaaagaccttggcgcccatgaccaccgagattgtgcgcggggtc
gagcgggtgctggccaccgcccaggaggtgcagctcctgctgcccgccaccccatcgccc
gcgcagtccgaggccgtcgccgacgtgcgcggccagctggaccggctgttgccaccgggc
ttcgtcaccgcaaccggccgagcgcacctcgccgatctcacccgctatctggtcgcgatc
cgtcgccgcctcgacgggctggcacacggcgtgcaggccgaccgggagcggatggcccgg
gtgcacagcgtgcaggacgcctacgacgaactgctacgcgagctgccacgagcggcaacg
gcggcggccgacgtccgcgatatcgcccgccagctcgaggaactcagggtgagcctgtgg
gcccagcaactcggcacgccacggccggtcagcgagcagcggatctaccgcgccatcgac
gcggtgcgcgatcgtcgctga
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