Mycobacterium malmoense: K3U93_04165
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Entry
K3U93_04165 CDS
T07571
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmam
Mycobacterium malmoense
Pathway
mmam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K3U93_04165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmam03021
]
K3U93_04165
03400 DNA repair and recombination proteins [BR:
mmam03400
]
K3U93_04165
Enzymes [BR:
mmam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K3U93_04165
Transcription machinery [BR:
mmam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K3U93_04165
DNA repair and recombination proteins [BR:
mmam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K3U93_04165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QZA18405
LinkDB
All DBs
Position
889339..893289
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKGVEDQRDTELEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEIEGDTGEYQ
PAADDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGTNGWQPGD
AWMAETTLGRVLFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDRYEERADKVEKQFQRGALNHEERNEALVEIWKE
ATDEVGQALREHYPSDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE
LAERAADGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPSIDALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSEGVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIERAGFESENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDHYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggcctggccaccgcggaggacatc
cggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcggtgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggacacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgtcgcgcctgggatacctgctggacctg
gccccgaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacctcggtcgac
aacgagatgcggcacaacgagctgtcgacgctcgaggccgaaatgatggtggagcgcaag
ggcgttgaggaccagcgcgacaccgaactggaggcccgtgcgcagaagctggaggccgac
ctggccgagctggaggcggagggcgccaaggccgatgcccggcgcaaggttcgtgacggc
ggcgagcgggagatgcgccagatccgcgaccgcgcgcagcgtgagctggaccggctggag
gacatctggagcaccttcaccaagctggcccccaagcagctcatcgtcgacgagaacctc
taccgcgagctggtcgaccgttacggcgagtacttcaccggtgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagtcgctgcgcgaggtc
atccgaagcggcaaggggcagaagaagcttcgcgcgctcaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtgccggtgatc
ccgccggaattgcgcccgatggtgcagctcgacggcggccggttcgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccggttgaagaggttaattgacctc
ggagctcctgaaatcattgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgccgcgggcgcccggtcaccgggcccggcaaccgtccgctgaag
tcgctgagcgacctgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgcgtcgactactcgggccgcagcgttatcgtggtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctc
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgt
ccccaggtgtgggacgtgctggaagaggtcatcgccgagcatccggtgctattgaacagg
gcaccgacgctccacagattgggcatccaggccttcgagccaatgctggtggagggcaag
gccattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggcgatcag
atggcggtgcacctgccgctctcggccgaggcgcaggccgaggcccgcatcctgatgctg
tcttccaacaacatcctgtcgccggcgtccggtcgcccgctggccatgccgcgactggac
atggtgaccgggctgtactacctgaccaccgagatcgagggcgacacgggcgaataccag
ccggccgccgacgaccgtccggaaacgggtgtgtactcctcgccggccgaggccatcatg
gccgccgaccgcggtgttttgagcgtgcgggccaagatcaaggtgcggttgacccagctg
cgtccgccggccgagattgaggccgagctgttcggcaccaatggctggcagccgggggac
gcgtggatggccgagaccacgctgggccgggtgttgttcaacgagctgctgccgctgggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggc
ttctactgggcgacccgcagcggtgtcacggtctcgatggccgacgtgctggttccgccg
cgcaagaaggagatcctcgaccgctacgaggagcgggccgacaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgaggagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgggagcactaccccagcgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggcgggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggggctcgaaagggcttg
gcggacaccgcgttgcgtaccgccgactccgggtatctgacccggcgtctggtggacgtt
tcgcaggacgtcatcgttcgcgagcacgactgccagaccgagcgtggcatcgttgtcgag
ctggccgagcgcgcggccgacggcacgctgatccgcgacccgtacatcgaaacctcggcg
tacgcgcggactttgggcgccgacgcggtcgacgaggcgggcaacgtcgtcgtcgcgcgc
ggtgaggacctgggtgacccgtcgatcgacgccctgttggcggcgggcatcacgcaggtc
aaggtgcgctcggtgctgacctgtaccaccggcacgggcgtgtgcgcgacctgctacggg
cgctccatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtggccgcc
cagtccatcggtgagcccggcacgcagctgaccatgcggaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccgcgggtgcaggagctgttcgaggcccgcgtcccg
cgcggcaaggcgcccatcgccgacgtcaccgggcgggtccgtctcgaggagggcgagcgc
ttctacaagatcaccatcgttcccgacgacgggggcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctccgcgtgttcaagcacgaggacggctccgagggggtgctgtcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgagtcaccatcatcgactcgggcgcgacggagttcctgcccggctcgctg
atcgagcgtgcgggattcgagtcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggtcgtccggtgctgatgggtatcacgaaggcgtcgctggccaccgactcgtgg
ctctcggcggcgtcgttccaggagaccacgcgggtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccgggatcaaccgctaccgcaacatccaggtgcaacccaccgaggaggcccgcgcc
gcggcgtacacgatcccgtcctacgaggatcactactacagcccggacttcggccaggcc
accggggccgcggtcccgctggacgactacggctacagcgactaccgctaa
DBGET
integrated database retrieval system
