Mycobacterium malmoense: K3U93_08705
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Entry
K3U93_08705 CDS
T07571
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmam
Mycobacterium malmoense
Pathway
mmam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3U93_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmam03019
]
K3U93_08705
Messenger RNA biogenesis [BR:
mmam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3U93_08705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QZA19187
LinkDB
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Position
1861725..1863410
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AA seq
561 aa
AA seq
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MNEDLVPPGPLTPGGLRVTALGGIGEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
LPDLRHIEDRLDDIEALVLTHAHEDHIGAIPFLLRLRPDIPVVGSTFTLALVAAKCREYT
INPVFVEVAEGQRSTHGVFECQYFAVNHSIPDALAIAIRTGAGTVLHTGDIKLDQLPLDG
RPTDLPGMSRLGSQYGAGVDLFLCDSTNSEIPGVGPSESEVGPALHRLIRGADGRVIVAC
FASNVDRVQQTIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVDDSDLIDISAAEMMAP
ERVVLITTGTQGEPMSALSRMSRGEHRSITLTSEDLIILSSSLIPGNEEAVYGVIDSLAK
IGARVVTNQQVRVHVSGHAYAGELLFLYNGVRPRNVMPVHGTWRMLRANAKLAARAGVPE
ESILLAENGVSVDLVAGKASIAGAVPVGKMFVDGLITGDVGDITLGERLILSSGFVAVTV
VVKRGTGRPAAAPHLYSRGFSEDPKALEPAVREVEAELEQLAAADVTDPIRIAQGVRRTV
GKWVGETYRRQPMIVPTVIEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaagacctcgtcccacccggtccgctgactccgggtggcctgcgggtcaccgcg
ctgggtggcatcggcgaaatcggccgcaatatgacggttttcgagcacctgggccggttg
ctgatcatcgactgcggggtgatgtttcccacgcacgacgagcccggcgtcgacctcatc
ctgccggacctgcgccacatcgaggaccggctcgacgacatcgaggcgttggtgctaacc
cacgcgcacgaggaccacatcggggcgattccgttcctgctcaggctgcggcccgacatc
ccggtcgtcggttcgacgttcaccctggcgctggtcgccgcgaaatgccgcgaatacacc
atcaacccggtgttcgtcgaggtcgccgagggtcagcggagcacgcacggcgtgttcgag
tgtcagtatttcgcggtcaaccactccatcccggacgcgctggccatcgcaatccgcacc
ggcgcgggaaccgtcttgcacaccggtgacatcaagctcgaccagcttccgctcgacggc
cggcccaccgacctgcccggcatgtcccggctgggctcacaatatggagccggcgtggac
ctgttcctgtgcgactcgaccaactccgagatccccggcgtcgggccctcggaaagcgag
gtgggccccgcgctgcaccggctgatccggggcgccgacggccgcgtcatcgtggcatgc
ttcgcctccaacgtggaccgggtgcagcagaccatcgacgccgcggtggcattgggccgg
cgggtgtcgttcgtcgggcggtcgatggtgcgcaacatgggcatcgcccgggagctgggc
ttcctgcgcgtggacgattccgacctgatcgacatctccgccgccgagatgatggcgccc
gagcgggtggtgctgatcaccaccggcacccagggcgagccgatgtcggcgctctcgcgc
atgtcgcgcggcgagcaccgcagcatcaccctgacgtcggaggatctgatcatcctgtcg
tcgtcgctgataccgggcaacgaggaggcggtctatggagtcatcgactcgctggccaag
atcggggcccgtgtcgtcaccaatcaacaggtgcgcgttcatgtttccggtcatgcctac
gcgggcgagctgctattcctctacaacggggtgcggccgcgcaacgtgatgccggtccac
ggcacctggcggatgctgcgcgccaacgccaagctggcggcgcgtgccggtgtgccggag
gagtcaatcctgttggccgagaacggcgtcagcgtcgacctggtcgccggcaaggcgtcg
atcgccggggcggtgccggtcggtaagatgttcgtcgacggcctgatcaccggcgatgtc
ggcgacatcaccctgggcgaacggctcatcctgtcgtcgggtttcgtcgcggtgaccgtg
gtggtcaagcgcggcaccggccgcccggcggccgcgccacacctgtattcacgcggtttc
tccgaggatcccaaggcgctcgagcccgccgtgcgcgaggtcgaggcggagctggagcag
ctggccgccgccgacgtcaccgatccgatccggatcgcccagggcgtgcgccgcaccgtc
ggcaagtgggtgggcgaaacctatcgccggcagccgatgatcgtgccgacggtcatcgag
gtttaa
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