Martes martes (European pine marten): 308343074
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Entry
308343074 CDS
T12008
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
mmaq Martes martes (European pine marten)
Pathway
mmaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308343074 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaq03019
]
308343074 (SKIC3)
Messenger RNA biogenesis [BR:
mmaq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308343074 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_17
TPR_16
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_12
TPR_11
CFAP70_TPR_C
CFAP70_mid_TPR
ANAPC3
TPR_9
CABIN1_N
ARM_TT21_2nd
ARM_TT21_C
TPR_INTS8_3
TTC22_N
ARM_TT21_5th
Fis1_TPR_C
TPR_6
TPR_20
TPR_15
TPR_5
TPR_30
Retrotran_gag_2
BTAD
TPR_Psidin_N
Motif
Other DBs
NCBI-GeneID:
308343074
NCBI-ProteinID:
XP_080660073
LinkDB
All DBs
Position
5:48161262..48243183
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCSHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHVEVARTWHKLIKTRQEEGADSQELHQLWKKLTQLLAESTEDQNNETQQ
LLLAAFENALDLSDKIPGEDHQVLYRQFIHCLSKFPHETTRLKKACEGMINIYPTVQYPL
EVLCLHLIESGSLTDEGQQYCCRLMEMDPRSGPGFIGLGIKALQDKKYEDAVRNLTEGLK
ESPLCTAGWYHLAEVQVKMHRPKEAVLSCNQALKNVDNLGVSGGSLHQKNLCLRLKAEAL
IKLSDYESSVEAICTLDQVSDANNIPGLLVLKSLAYLNKGSLDEASKIMEDLLSSYPDLA
EVHALEALIHFTKKDYLQAEKCFQRALEKDAEVAEYHYQLGLTYWFMSEETRKDKTKTLT
HFLKAARLDPYMGKVFCYLGHYYRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEEMETALAILTAVTQRASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQLIIK
KKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTWALQHQADVSCLWKLV
GDACTSLYAVSPSKVNVTVLGVLLGQKEGKQVLKKSELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQYLAETGSNTNDPKELLEKSLHCLKKAVRLDSKNHLYWNALGVVSCHNGI
RNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRDTELYRYNIVQMN
AIPAAQVVLSKYIERIQNYAPAFTMLGYLNEHLQLKKEATEAYQRAMLLLQTAEDQDTYN
VTVRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESERDKAHILTALAITEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLTMQDATL
SKAALNELLKHIKQKDSDYPKCLLISAIYALQGRSVAVQRQASKAVHSNPADPALWSLLS
RVVAQYANRSAKGGAIAGNVAHILDSNHGKKALLYTAVNQLALGSSSAETEKNIALKTIQ
KAAFLSPGDPAVWAGLMAACHADDKLALVNNTQPKRMDLYLALLSAVSASIKDKEFLKDY
NQSLEKWCLSQAVTGLVDTGRISEAEALCMKNLKSNPDQPAVILLLRQVQCKLLLESQNP
LPDAVLEELQKTVMSNSTSVPAWQWLAHIYQSQGMMGAAEMCYRKSLQVASQQGSWSGKL
SSLLRLALLALKACMANISNDHWSSLVQEATTEALKLCFCPLAVFLQALLQFNRKMGARE
TRRLLERVVYQPGYPKSIVSTARWYLLRHLHAKNDYELIDVLVNNAKTHGDTRALELNQK
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaaggaagtaaaaactgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacattgtaagacagtgttaaaacaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagccgagttagaacaacctgatcaggctcag
ggtgcctataaaaaagctgctgaactagagccagatcaattactggcttggcaggggtta
gcaagcttatatgagaaatgtagccacataaatgctaaggatgacttgcctggtgtttac
cagaagctcctggatctttatgaaagtgttgacaaacagaagtggtgcgatgtctgtaag
aaacttgtggatctatattaccaagaaaagaaacacgtagaggtggcccgaacatggcac
aagttgataaagacacggcaggaggaaggtgcagacagccaagagcttcaccagctgtgg
aagaaattgactcagttgctggctgagagtactgaggatcagaataatgagacccagcaa
ttgcttttagctgcttttgagaatgcactggacttatcagataagattcctggtgaagat
caccaagtactttatagacagttcattcactgtttatccaaatttcctcatgagaccact
agattgaagaaggcctgtgaaggaatgataaacatctatcccactgtacaatatccatta
gaagtgctttgtttgcatttaattgaatcaggcagtcttactgatgaaggacagcagtat
tgttgcagattaatggaaatggatcccagaagtggtccaggcttcattggtctaggcatt
aaagcattacaagacaaaaagtatgaagatgctgttaggaacctaacagaagggttaaag
gaaagccctctttgcacggctggatggtatcacctggcagaagtccaagttaaaatgcat
agacctaaggaagctgttctttcttgcaatcaagctctgaagaacgtagataatcttggt
gtgtctggtggcagtcttcatcagaagaatctttgtctccgtttgaaagcagaggctttg
attaaactctcagattatgaatcttcagtggaagcaatttgtactcttgatcaggtttct
gatgcaaataatatcccaggacttttggttcttaaaagcttggcctatctgaacaaaggt
tcattagatgaagcttcaaagattatggaagaccttctctcttcttaccctgacctcgct
gaagttcatgccctggaagctttgattcattttaccaaaaaggactatctacaagcagag
aaatgttttcagagagctcttgagaaagatgctgaagttgctgaatatcattaccaactt
gggttaacatattggttcatgagtgaagaaacaagaaaagataaaacaaagactcttacc
cactttctaaaggctgccagactggatccatacatgggcaaagttttctgctatttaggt
cattactacagagatgtggtaggagataaaaacagagcccgtggctgttacaggaaagct
tttgaattagatgatactgatgctgaatctggggctgcggcagttgacttaagtgtggag
cttgaagagatggaaactgccttagctatcctaacagcagtaactcaaagggcaagtgct
ggaacggcaaaatgggcctggcttaggcgaggactatactatttgaaagctggtcagcat
tctcaggctgtggctgatttacaggcagcattaagggcagacccaaaggacttcaattgt
tgggagtcattaggagaggcatacttaagcagaggtggctatacgacagccttgaaatcc
ttcacaaaagccagtgagctgaacccagaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggcggtagctcaataccagctgatcattaaa
aagaaagaagattatgtaccagctttgaaaggtttgggtgaatgccatctcatgatggca
aaagcagctctcgtcgattatcttgatgggaaagctgtagactatatcgaaaaagcactg
gaatattttacttgggctctgcaacatcaagctgatgtctcttgcctttggaagctagtt
ggggatgcttgtaccagtctgtatgctgtctcaccatccaaagtgaatgttactgtttta
ggagtccttttaggtcagaaagaaggcaaacaagtattaaagaagagtgagctcctccat
cttggaggaaggtgttacggtcgtgcgttaaaactgatgtctacatctaatacgtggtgt
gatcttggaattaattattatcgccaagcacaatatctagcagaaacaggcagcaataca
aatgatcctaaagagttgttggagaaatctttacattgtctgaaaaaggcagtgagactt
gacagtaaaaatcacttatactggaatgctcttggtgtggtttcatgtcacaatggtatt
agaaattacgcccttgctcaacactgtttcatcaagtctatccagtcggaacaaattaat
gctgttgcatggaccaacttgggagtgttataccttgcaaatgaaaacattgagcaagct
catgaagctttcaaaatggctcagtctcttgatccgtcttatttaatgtgctggattgga
caagctcttattgcagagacagttggaagttatgacactatggatcttttcaggcatact
acagaactcagtatgcatactgagggagcaataggttatgcgtactgggtctgtacgaca
ctacaagataaaagcaacagagatacagagctgtaccggtacaacattgttcagatgaat
gctattccagcagcacaagttgttttgagtaaatacatagaaagaattcagaattatgct
ccagctttcacaatgttgggttacttaaatgaacatctacaactgaaaaaggaagccaca
gaggcataccaaagggcaatgttattgttacagactgcggaagaccaagatacttacaat
gttacagtaagaaattatggaagattgttatgttccattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaagagttagaagacatcataggttttgcattggct
ttatttatgaaaggtctatataaagaaagcagcaaagcctatgagagggccttgtctatt
gttgaatcagagcgggacaaagcccatatcttgacagctctggcaataacggagtataaa
caaggaaaaatggatgtagccaagacattgctatttaaatgttccatcttaaaggaacca
accacagaaagccttcaagccctgtgtgctcttggattgacaatgcaggatgctacactt
tccaaagcggcacttaatgaattgctgaagcacatcaaacagaaagacagtgattatcca
aagtgccttctcatttcagcgatttatgcactgcaaggccgcagtgtggcagtgcagaga
caagcatctaaagctgttcatagtaacccagctgatccagctctttggtctctgttgtcc
cgagtagttgctcagtatgctaaccgaagtgcaaagggaggtgctatagcaggaaatgtg
gctcatattttggactcaaatcatggaaagaaggcattactgtacactgcagtaaatcaa
ttagctttgggaagcagttcagcagaaactgaaaaaaatattgcactaaagaccattcag
aaagcagcttttctttctccaggtgatcctgctgtctgggctgggctgatggcagcctgt
catgctgatgataaactggctctagtgaataatactcagccaaagagaatggatctatac
ttggcactgttatctgctgtttccgcttcaattaaagacaaagaattccttaaggattat
aaccaatctctggaaaagtggtgtctctcccaggctgtcactggtctagtagacacagga
agaatatctgaagctgaagccctctgcatgaagaatttaaaaagtaaccctgatcagcca
gctgttatcttacttttgagacaagttcagtgtaaactactcctggagtcacaaaaccct
ctcccagatgccgttcttgaagagctgcaaaaaacagtcatgtccaactcaacttctgtt
ccagcatggcagtggctggcacacatttatcagtcccaaggaatgatgggtgctgcagaa
atgtgttatagaaagagtctgcaagtagcatcccaacagggcagttggagtgggaagctg
tcgagtctgttgagactagccctacttgctttaaaagcctgcatggctaatatttccaat
gatcactggtcatctttagttcaagaagctacaactgaggccttaaaactttgtttttgt
ccgttggctgtctttttacaagctttgttacaattcaaccgcaaaatgggggcaagagag
acacggcgacttttggaaagagtggtgtatcagcctgggtatcccaagtctattgtatca
accgcacgttggtatctactgagacacttacatgccaaaaatgactacgagcttattgat
gtgctggtaaacaatgccaaaactcatggagatacaagagcattggaactgaatcagaaa
ttgtcttcacagtaa
DBGET
integrated database retrieval system
