Martes martes (European pine marten): 308345221
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Entry
308345221 CDS
T12008
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mmaq Martes martes (European pine marten)
Pathway
mmaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308345221 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaq03019
]
308345221 (SKIC2)
Enzymes [BR:
mmaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308345221 (SKIC2)
Messenger RNA biogenesis [BR:
mmaq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308345221 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308345221 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
308345221
NCBI-ProteinID:
XP_080663321
LinkDB
All DBs
Position
6:complement(120152697..120163484)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRLVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSTRKWQRKMDPWSLLATQGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
QDLLTVPPGFKKGVDFTPKGHPVPASGLLSLSRLLEPLDLGGGDEDETEAVGQPGIPRGD
TVAASPCSASMARASSLEDLVLKETSTAVSPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLNSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRVFTTLVLCDKPVSEDPQERAPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGDKILEDFSRRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIGGAQCVHSPRF
SAQYLKLQERVQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPNTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctacctcctccagatcccctggatctgccccttcgg
ctggtggagctgggatgcaccgggcgctgggagctgctgaatgtgcctggggcaccagag
agcacccttccccacggcctccctccctgtgccccagatctgcagcaggaagcagagcag
ctgtttttgtcatctccagcctggttgcctctgcatggtgtggagcactccacccgaaaa
tggcagaggaaaatggatccctggtctctcctggccacacagggagccccagtgccctcc
gaccttcaggcccagagacacccaaccacaggccagattctgggctacaaagaggtcctg
ttggagaatacaaacctatcggccaccacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcgggaggaggctgaggaggagatagactttgag
caagatcttcttactgttccgcctggcttcaaaaaaggtgtggactttacaccaaagggt
cacccagttccagcttctggcttgctcagcctcagtcgtttgctggagcctctggatttg
ggtgggggagacgaggatgaaactgaggcagtgggacagccaggaattcccagaggggac
actgtggctgcctccccctgcagtgcttccatggcccgagcaagcagcttggaggaccta
gtgttgaaggaaacatccacagctgtatcccctccagagccccccaaacccctgcctcag
gagcagtgggcaattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagccggccttccagtgggcatttgagccagatgtgttccagaagcaggccatcctg
cacttggagcggcatgattctgtcttcgttgcggctcacacatctgcggggaagacggtt
gtggctgaatatgccattgcccttgcccagaaacacatgactcgcaccatttacacatcg
cccatcaaggccttgagcaaccagaagttccgagactttcgaaacacattcggggatgtg
ggattgctcactggggatgtgcagctgcacccagaggcctcctgcctcattatgacaaca
gagatccttcgctccatgctgtacagcggctcagatgtcatccgggacctggagtgggtc
atcttcgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtg
ctcatcatgctccctgaccacgtctccatcatcctcctgagtgccaccgtccccaacgcc
ctcgagttcgccgactggatcgggcgactgaaacgtcgccagatatacgtgatcagcact
gttgcgcgccccgttcccctggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggcgccttccacacaaaggggtactatgcc
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacttttggggccaagcag
cccacgcatcagggggggcccgcacaggaccgcggtgtgtacctgtcccttctggcctcc
ctccgcacccgcgcgcagctgcctgtggtggtgttcaccttctcccggggtcgctgtgat
gagcaagcctcgggcctcaactcccttgacctcaccacaagttcagagaagagtgagatt
cacctcttcctgcagcgttgccttgcccgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtccgaacttctgcaccgcggcctgggtgtgcaccacagtggcatcctg
cctattcttaaagagattgtggagatgctcttcagtcgaggcctggtcaaggtcttgttt
gccacagagacttttgccatgggtgtaaatatgcctgcccgaacagtggtgtttgactcc
atgcggaagcatgatggctccgccttccgggacctgctccctggagagtatgtgcagatg
gcaggccgggcgggccggaggggcctggaccccaccggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcacagcta
cagtcccagttccgactcacatataccatgatactgaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccatgaacaggctctagctgaactgaccaagagactaggggccttggaggaacctgac
acaactggccaattggtggacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcggcgcatcatggagtctgtgaatgggctcaagtctctctca
gcgggaagggtagtggtcgtgaagaatcaggagtatcacaacacattgggtgtgatcctg
caggtctcctcgaactccaccagcagggtatttacaaccctggtcttgtgtgataagcct
gtgtctgaggacccacaggagagggcaccagccaccccagatgtgccctaccccgatgat
cttgtggggttcaagctgttcctgcctgaaggaccttgtgaccacacagtggccaagctc
cagccaggagatgtggccgccatcaccaccaaggttctccgggtgaatggggacaagatc
ttggaggacttcagcaggaggcagcaaccaaaattcaagaaggatcctcccattgcagcc
gtgaccactgctgtgcaggaactgctgcgtctggctcaggcctacccagcgggacctcct
acccttgaccctgtcaatgacctgcagcttaaggatgtatcagtggtggagggggggctc
cgagcccggaagctggaggagctgatcggcggtgctcagtgtgtgcatagcccccgtttc
tctgcccagtacctgaagctgcaggagcgcgtgcagatacagaaggagatggaacgacta
cgcttcctgctgtcggatcagtcactgctgctcctcccagagtatcaccagcgagtagag
gtgctccgaaccctgggttatgtagatgaggtgggcacggtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaacgctctg
agtgccctgcggccggaggagattgcagccctcctctccggcctggtctgccagagccct
ggggaccctggggagcagctcccaaacaccctcaaacagggagttgaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcttgaaccagacagtggaggaa
tttgtgggggagctgaattttgggcttgtcgaggttgtgtacgagtgggcccggggcatg
cctttctccgagctggcggggctgtcggggacccctgagggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgaggggggcagcccgccttgtaggtgagcct
gtattaggtgccaagatggagacagcagctaccctgctacggagggacatcgtctttgca
gccagcctgtacactcagtga
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