Martes martes (European pine marten): 308347325
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Entry
308347325 CDS
T12008
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform 1
KO
K19719
collagen type II alpha
Organism
mmaq Martes martes (European pine marten)
Pathway
mmaq04151
PI3K-Akt signaling pathway
mmaq04510
Focal adhesion
mmaq04512
ECM-receptor interaction
mmaq04518
Integrin signaling
mmaq04974
Protein digestion and absorption
mmaq05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mmaq00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
308347325 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308347325 (COL2A1)
04518 Integrin signaling
308347325 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308347325 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308347325 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
308347325 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmaq00536
]
308347325 (COL2A1)
Glycosaminoglycan binding proteins [BR:
mmaq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308347325 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
308347325
NCBI-ProteinID:
XP_080666772
LinkDB
All DBs
Position
8:complement(83370304..>83401360)
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AA seq
1488 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCQGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLTAAGGHCVLFQGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM
GPRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEP
GDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGEAGAVGAPGAPGPPGSPGPA
GPTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQPAGDLRQHDAEVDATL
KSLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET
GETCVYPSPANVPKKNWWSSKGKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCT
KHTGKWGKTLIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtagccgctgtc
cttcgatgtcagggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccctgagacc
cccttcggagagtgctgccccatctgctcaactgacctcaccgctgccggtggtcactgt
gtcctgtttcagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaa
ggacctcctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgac
aaaggcgaaaaaggtgcccctggacctcgtggcagagatggagagcctggaacccctgga
aatcctggcccccctggtccccctggtcccccaggtccccccggccttggtggaaacttc
gctgcccagatggctggaggattcgacgagaaggctggtggtgcccagatgggagtgatg
caagggccaatgggccccatgggacctcggggacctccaggccctgctggtgctcctgga
cctcaaggatttcaaggcaaccctggtgaacctggggaacccggagtctctggtcccatg
ggtccccgtggtcctcctggcccccctggaaaacctggtgatgatggcgaagctggaaag
cctgggaaatctggtgaaagaggcccccctggccctcagggtgctcgcggcttcccggga
accccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaag
ggagaagccggggctccaggtgtgaagggagagagtggttcaccaggagagaatggctct
ccaggcccaatgggtccccgaggcctgcccggtgagcgaggacggactggccctgctggt
gctgcaggtgcccgaggcaacgacggccaaccaggccccgcaggcccaccgggtcccgtg
ggtcctgctggtggtcctggcttccctggtgctcccggggccaagggtgaagctggcccc
acaggtgctcgcggtcccgaaggtgctcaaggtcctcgaggtgaacctggtactcctggg
tcccccgggccggctggtgcctccggtaaccccggaacggatgggattcctggagccaaa
ggatctgctggtgctcctggcattgctggtgcccctggcttccctgggccccgtgggcca
cctggtcctcaaggtgcaactggtcctctgggcccgaaaggtcagacgggcgagcctggt
attgctggcttcaagggtgaacaaggccccaagggagaacctggccctgctggcccccaa
ggagcccctggtcctgctggtgaagaaggcaaacgaggggcccgtggagagcctggtggt
gctgggcccgtcggtccccccggagagagaggcgctcctggtaaccgtggtttcccaggt
caggatggtctggcaggtccaaagggagcccctggggagcgagggcccagtggccttgct
ggtcccaaaggagccaatggtgaccctggccgtcctggagagcctggccttcctggagcc
cggggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctgga
gcccctggtgaagatggtcgccctggtcctccaggtcctcagggcgctcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgccaacggtgagcctggcaaggctggtgag
aagggactgcctggtgctcctggtttgagaggtcttcccggcaaagatggcgagacaggt
gctgcaggaccccctggacccgccggacctgctggtgaacgaggcgagcagggtgctcct
gggccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaa
ccaggtgaccagggtgttcccggtgaagctggagcccccggcctcgtgggtcccaggggt
gaaagaggtttcccaggcgaacgtggctctcccggggcccagggcctccagggcccccgt
ggcctccccggcactcctggcacggacggtcccaaaggtgcatctggcccggctggtccc
cctggggctcagggccctccaggtctgcaagggatgcctggtgagaggggagcagctggc
atcgctgggcccaagggagacaggggtgacgttggtgagaaaggccccgagggagccccc
gggaaggacggtggacgaggcctgactggtcccattggcccccctggccccgctggtgcc
aatggtgagaagggagaagttggccctcccggtcctgcaggaactgctggtgctcgaggt
gcccccggtgaacgtggagagactggaccccccgggcccgctggattcgcaggacctcct
ggtgctgatggccagccaggggccaagggcgagcaaggagaggccggccagaaaggtgat
gctggtgccccaggtcctcaaggcccctctggagctcctgggcctcagggtcctactggt
gtgactggtcctaaaggagcccgaggtgctcaaggtcccccgggagccactggattcccc
ggagctgctggccgtgtcggacccccaggctccaatggaaaccctgggccccctggtccc
cctggtccttctggaaaagatggtcccaaaggcgctcgaggagacagtggcccccctggc
cgtgccggtgaccctggtctccaaggtcctgctggaccccctggcgagaagggagagccc
ggagatgacggtccctctggtcctgatggtcctccaggtccccaaggtctggctggtcag
aggggtatcgttggtctacctgggcagcgcggtgagagaggattcccgggcttgcctggg
ccatcgggtgagcctggcaagcagggagctcctggtgcatctggtgaccgaggtcccccc
ggccccgtgggtcctcctggcttgaccggtcctgccggtgaacctggacgagagggaagc
cctggtgctgacggcccccctggcagagatggcgcagctggagtcaagggtgatcgtggt
gaggccggtgcggtgggtgcccctggtgctcccgggccccctggctctcctggccccgcc
ggcccaactggaaagcagggagaccgaggagaagctggtgcacaaggccccatgggtcct
gcaggaccggctggagcccggggaatcccaggccctcaaggtccccgaggtgacaaagga
gaagctggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcag
ggtctgcctggcccccccggtccttctggagaccaaggtgcttctggtcctgctggtcct
tctggtcctagaggtcctcctggccctgttggtccctctggcaaagatggtgctaatgga
atccccggtcccatcggcccccctggcccccgtggacggtcaggcgaaactggccctgcc
ggtcctcctggaaaccccgggccccctggccctccaggtccccctggccctggcatcgac
atgtctgcctttgctggcctcggccagagagagaagggccccgaccccctgcagtacatg
cgggccgaccagccagctggtgacctgagacagcacgacgccgaggtggacgccacgctc
aagtccctcaacaaccagatcgagagcctgcgcagccccgagggctcacgcaagaaccct
gctcgcacctgccgggacctgaaactctgtcaccctgaatggaagagcggagactactgg
attgaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagact
ggtgagacctgcgtctaccccagcccagcgaacgttcccaagaagaactggtggagcagc
aaaggcaaggacaagaaacacatctggtttggagaaaccatcaacggcggcttccacttc
agctacggtgacgacaacctggctcccaacactgccaacgtccagatgacgttcctacgc
ctgctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcatcgcctac
ctggacgaggcagccggcaacctcaagaaggccctgctcatccagggctccaatgacgtg
gagatccgggctgagggcaacagccgcttcacatacaccgtcctgaaggatggctgcacg
aaacacaccggtaagtggggcaagactctgatcgagtaccggtcacagaagacctcacgt
ctccccatcattgacattgcgcccatggacataggagggcccgagcaggaatttggtgtg
gacatagggcctgtctgcttcttgtaa
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