Modestobacter italicus: MODMU_5072
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Entry
MODMU_5072 CDS
T02167
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmar
Modestobacter italicus
Brite
KEGG Orthology (KO) [BR:
mmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmar03019
]
MODMU_5072 (hrpA)
Enzymes [BR:
mmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MODMU_5072 (hrpA)
Messenger RNA biogenesis [BR:
mmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MODMU_5072 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_16
T2SSE
ABC_tran
nSTAND3
NACHT
AAA_30
FtsK_SpoIIIE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CCH90452
UniProt:
I4F489
LinkDB
All DBs
Position
complement(5061073..5065011)
Genome browser
AA seq
1312 aa
AA seq
DB search
MTTPHDDLRSRLPALTLADEHRLGRRLDGTRRTKDPAARARQRERIAEDVAVAEERIARR
RAAVPVLSYPEELPVSQRRDDIAAALRESQVVVVAGETGSGKTTQLPKILLELGRGVRGR
IGHTQPRRIAARTVAERIAEEIGSPLGDVVGWKVRFTDEVGDRTLVKLMTDGVLLAEVQR
DRMLRQYDTIIIDEAHERSLNIDFLLGYLARLLPRRPDLKLVITSATIDVDRIAKHFSYE
GNEVPVVEVSGRTYPVEVRYRPVIDPDDPEADEDRDQVSAIVDACAELVAEGPGDVLVFL
AGEREIRDTADALGERGFPHTEVLPLYSRLSAAEQHRVFAAHTGRRIVLATNVAETSLTV
PGIKYVVDPGTARISRYSHRTKVQRLPIEPISQASARQRSGRCGRTSEGIAIRLYTEDDF
DARPEYTDPEILRTNLASVLLQMASLELGDVADFPFIDPPDRRSVADGLALLEELGALDD
AGRLTETGRSLAALPLDPRIARMVVEADRRGVLEEVLVIAAGLTVQDVRERPAEHQQAAD
ELHRRFADENSDFLGLLNLWRYLAEQQDALSGNQFRRNVKREFLHYLRIREWQDLHGQLR
GTARRLGMTTGALATEPDEKGVTASLLAGLLSQIGTQAEAPKGDKRPSREYVGTRNTRFV
IAPGSPLAKKPPRWVVAAELVETSRLFARMVARIDPEVVERLADHLVKRQYSEPRWDAKR
GSVVATERVTLYGLPLVVGRRVQYGSIDPVVSRELFIRHALVQGEWTTHHAFWAENARAI
ERVAELEERARRRDIRVDDETLFELYDARVPADVVSTRHFDRWWKQARRETPDLLTFTPE
MLTNAAAAGQVQAEDYPDEVRLTQGLTLPLSYAFAPGAVEDGVTVDVPLGVLDTVAERTS
GESLAFTVPGQRAELVTELLRSLPKQLRRGLVPIPDRVREVLPHIDPTEPLLPALERELR
RATAVTIPPDAWQPAAVPAHLRATYRVLDDQQRPLAQGKDLTALRAQVAPQARASLARAA
STYERTGQTAWTFGDLPATVEVQRGGHVVTAFPALVDEGTTVGVRVVPTEAEASRLAWRG
ARRLLVLAAGSPVKQVVKGLSPRTRLALQFNPDGEIPDLVADCVDAAADELIAAAGGPPR
TQAAFEALVTTARAELPALTADAVRRVEAVLTQAREVAVAIGAAPGRRVPDAAIADLRRQ
MTGLLHRGFVADAGRRRLPDLVRYLTAMAYRLEKLPANAARDALWSAQVEAVTKEYEQLR
ARIPATGAPDDPVARVRWMVEELRVGLFAQTVGTPRPISEQRVYKAIDQLSA
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccccgcacgacgacctccggtcgcggctgcccgcgttgaccctcgccgacgag
caccggctcggacggcggctcgacggcacccggcgcaccaaggaccccgcagcccgcgcc
cggcagcgggagcggatcgccgaggacgtcgccgtcgccgaggagcgcatcgcccgccgc
cgcgccgccgtcccggtgctcagctacccggaggagctgccggtcagccagcggcgcgac
gacatcgccgccgcgctgcgcgagtcgcaggtggtcgtggtggccggcgagaccggttcg
ggcaagaccacccagctgccgaagatcctgctggagctcggccgcggcgtccgtggccgg
atcgggcacacccagccgcggcggatcgccgcccgcacggtggccgagcggatcgccgag
gagatcggctcgccgctgggcgacgtcgtcggctggaaggtccggttcaccgacgaggtg
ggcgaccggacgctggtcaagctgatgaccgacggcgtgctgctcgccgaggtgcagcgc
gaccggatgctgcgccagtacgacacgatcatcatcgacgaggcccacgagcggagcctc
aacatcgacttcctgctgggctacctggcccggctgctgccccgccgtccggacctgaag
ctggtcatcacctccgcgacgatcgacgtcgaccggatcgccaagcacttctcgtacgag
ggcaacgaggtgcccgtcgtagaggtcagcgggcgcacctaccccgtcgaggtccgctac
cgcccggtcatcgaccccgacgacccggaggccgacgaggaccgcgaccaggtcagcgcc
atcgtcgacgcctgcgccgagctggtggccgagggacccggggacgtgctggtcttcctc
gccggcgagcgggagatccgggacaccgccgacgccctgggcgagcgcgggttcccgcac
accgaggtgctgccgctctactcccggctgtcggcggccgagcagcaccgggtcttcgcg
gcgcacaccggccggcggatcgtgctggccaccaacgtcgccgagacgtcgctgacggtg
ccgggcatcaagtacgtcgtcgatccgggcaccgcacgcatctcccggtacagccatcgc
accaaggtgcagcggctgccgatcgagccgatcagccaggcctcggcccggcagcgctcc
ggccggtgcgggcgcaccagcgagggcatcgcgatccggctctacaccgaggacgacttc
gacgcccgcccggagtacaccgacccggagatcctgcgcaccaacctcgcctcggtgctg
ctgcagatggcctccctcgagctgggcgacgtcgcggacttcccgttcatcgacccgccg
gaccgccgctcggtcgccgacgggctggcgctgctcgaggagctcggcgcgctcgacgac
gccggccggctgaccgagaccggccgctcgctggccgcgctgccgctggacccgcggatc
gcccggatggtcgtggaggccgaccggcgcggggtgctggaggaggtgctggtcatcgcc
gccgggctcaccgtgcaggacgtgcgcgagcggccggccgagcaccagcaggccgccgac
gagctgcaccgccggttcgccgacgagaactccgacttcctgggcctgctcaacctctgg
cggtacctggccgagcagcaggacgcgctcagcggcaaccagttccggcgcaacgtgaag
cgcgagttcctgcactacctgcggatccgcgagtggcaggacctgcacggccagctgcgc
ggcaccgcccgccggctcggcatgaccaccggcgcgctggccaccgagccggacgagaag
ggcgtgacggcgtccctgctggccgggctgctgtcccagatcggcacccaggccgaagcg
cccaagggcgacaagcgcccgtcccgggagtacgtcggcacccggaacacccgcttcgtg
atcgcgccgggcagcccgctggcgaagaaaccgccgcgctgggtggtggccgccgagctg
gtcgagaccagccggctgttcgcccggatggtggcgcggatcgaccccgaggtcgtggag
cggctcgccgaccacctggtgaagcggcagtacagcgagccgcgctgggacgccaagcgc
ggctcggtggtggccaccgagcgggtcaccctctacggcctgccgctcgtcgtcggccgg
cgggtgcagtacggctcgatcgacccggtggtctcccgcgagctgttcatccggcacgcc
ctcgtgcagggcgagtggacgacgcaccacgccttctgggcggagaacgcgcgggccatc
gagcgggtcgccgagctggaggagcgcgcccggcgccgggacatccgggtcgacgacgag
acgctgttcgagctctacgacgcgcgggtccccgccgacgtcgtctccacccggcacttc
gaccggtggtggaagcaggcccgccgggagaccccggacctgctcaccttcacgccggag
atgctcaccaacgccgcggcggccgggcaggtgcaggccgaggactacccggacgaggtg
cggctgacccagggactgaccctgccgctgtcgtacgcattcgcccccggcgcggtcgag
gacggcgtgaccgtcgacgtgccgctgggcgtgctggacaccgtcgccgagcggacgtcg
ggggagtcgctggcgttcaccgtgcccggtcagcgcgccgagctggtcaccgagctgctg
cgctcgctgcccaagcagctgcgccgcgggttggtgcccatcccggaccgggtgcgcgaa
gtgctgccgcacatcgaccccaccgagccgctgctgccggcgctggagcgcgagctgcgc
cgggccaccgccgtcaccatcccgccggacgcgtggcagccggccgccgtcccggcccac
ctgcgcgccacctaccgggtgctcgacgaccagcagcgcccgctcgcccagggcaaggac
ctcaccgcgctgcgcgcgcaggtggcgccgcaggcgcgggccagcctcgcccgggcggcg
tcgacgtacgagcgcaccggccagacggcctggaccttcggcgacctgccggccacggtg
gaggtgcagcgcggcgggcacgtggtcaccgcgttcccggcgctggtcgacgagggcacg
acggtcggcgtccgcgtcgtcccgaccgaggccgaggcgagccggctggcctggcgcgga
gcccgccggctgctcgtgctggccgccggctcaccggtcaagcaggtggtcaaggggctc
tccccgcgcacccggctggcgctgcagttcaaccccgacggcgagatccccgacctggtc
gccgactgcgtggacgccgccgccgacgagctgatcgcggccgccggtgggccgccgcgc
acgcaggcggccttcgaggcgctggtgaccaccgcccgcgccgagctgcccgcgctcacc
gcggacgccgtgcgccgggtcgaggcggtgctcacccaggcccgcgaggtggcggtggcg
atcggtgccgcgccgggacggcgggtgcccgacgccgcgatcgccgacctgcgccggcag
atgaccgggctgctgcaccgcgggttcgtggccgacgccggacgccggcggctgcccgac
ctggtccgctacctcaccgcgatggcgtaccggctggagaagctgccggccaacgccgcc
cgggacgcgctctggtccgcgcaggtcgaggcggtgacgaaggagtacgagcagctgcgg
gcgcgcatcccggccaccggtgcgcccgacgacccggtcgcccgggtgcgctggatggtg
gaggagctgcgggtcggcctgttcgcccagaccgtgggcacgccccggccgatctccgag
cagcgggtctacaaggcgatcgaccagctgtcggcctga
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