Corallococcus macrosporus DSM 14697: MYMAC_001794
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Entry
MYMAC_001794 CDS
T05096
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmas
Corallococcus macrosporus DSM 14697
Brite
KEGG Orthology (KO) [BR:
mmas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmas03019
]
MYMAC_001794
Enzymes [BR:
mmas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYMAC_001794
Messenger RNA biogenesis [BR:
mmas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MYMAC_001794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
T2SSE
AAA_25
NACHT
AAA_30
nSTAND_NTPase5
nSTAND3
FtsK_SpoIIIE
Zeta_toxin
NAT10_TcmA_helicase
SLFN-g3_helicase
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATB46202
UniProt:
A0A250JRU8
LinkDB
All DBs
Position
complement(2127841..2131551)
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AA seq
1236 aa
AA seq
DB search
MSGDSPVPTPGGLPTLRFPPELPISSRVEDITAAIRAHQVVIVAGATGSGKTTQLPKILL
AMGRGRPRQIGVTQPRRIAATSVAARVARELGTELGTDVGYQIRFEDRSSRQTAVKFMTD
GVLLAQIHSDPLLRRYDTIVLDEAHERSLTIDFLLGWLKRILPRRPDLKVVVSSATIETE
RFSQFFGEAPVIQVEGRTFPVDVLYEPPPEDAELADAVADAVANVISLDPDGDVLVFLPG
EREIREAENALNARELRGTVVQPLYARLSAAEQSRVFATIPQRRVILATNVAETSVTIPG
IVYVVDTGVARLSRYEPRSGTTRLHIEPVSQASADQRKGRCGRVREGICVRLYDEVSFTT
RPAFTDPEIKRTGLAGVILRMKSLGLGDVEDFPFLDPPQPKAIAEGWRVLEELGAIEGKE
RTLTPLGHQLARFPVDPRIARMILAGVEYGCLDEVLIVAAALNLQDPRERPRELAQKADA
LHARFRDEHSDFTGLLKLWAFVREAEGRGTSHLRRVCRDNFLSFLRVREWRDVQRQLEET
VRELRLPRKGRGAPARGDVLHQALLTGLLSRIGQWNPEQRHYTGSKQTRFMVHPSSALAK
KPPAWVMAFELVETSQLFARTVAKLDPEWLAAAAPHLLKRSYSDPHWSEKSARAIVKENA
TLFGLTVFRERPVPLASRDPAEARLMFLEHALVRGEYRTRGAFQEKNRQVFERVARLRDK
ARRSELLDSEAMLTFFDKRVPADVTDGAGFEVWRRKAEAADPDVLVLSMEDALSHDPGLS
PAHYPDALKLHGASVPVTYTFDPSAEDDGITLSVPLLLLAQMGPGELDWTIPGWQREKFT
ALLEQLPRAQRKQLGPLPDLVDLLAKELEPFRGPMIPALVRAVSRLCGVDVSEESFRAEA
VVPYLRITLRVLDEKGKELARGRDVDALLKQHGGHARAALRSAAPASDWERKGLTAWTFG
ELPAVVTRRIGNLEVRSHPALVDRGATVDLVLLETSAAADAATRAGVRRLLMLAARGHVA
VSAARMPPPFPSLNGAPPARGQADAFRALVLARGVDDAFKLAPGAPLPRTKAAFEALLRD
GSPRIEQAARDWANAVVVTSAELSKTLAALKAASTGPSGAAAVRDIRSQLGQLFPAKLIE
WIPFSRLLHYPRYLRAAQARLARAVANPGKDAGKAAPFTPLWETFLTRYATVREQEAAQE
LRWTFEELRVAIFAPEVTTPVSVTVAKVGAALAALR
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgactcacccgtccccacccccggcggcttgccaaccctgcgcttcccccct
gagctccccatctcgagccgggtggaggacatcaccgcggccattcgcgcccatcaggtc
gtgattgtcgcgggggccaccggctcggggaagacgacgcagcttccgaaaatcctgctc
gccatggggcgcggccgcccgcgccagattggcgtcacccagccccggcgtatcgccgcg
acgagcgtggcggcgcgcgtggcacgcgagctcggcacggagctgggcacggacgtcggc
taccagattcgcttcgaggaccgctcgtcccggcagacggccgtgaagttcatgaccgac
ggcgtcctgctcgcgcagattcacagcgacccactcctgcgccgctacgacaccatcgtg
ctcgacgaggcccacgagcgcagcctcaccatcgacttcctgctcgggtggctcaagcgc
atcctcccccggcgccccgacctcaaggtggtggtgagctcggccaccatcgagaccgag
cgcttctcccagttcttcggagaggccccggtcatccaggtggagggccgcacctttccc
gtggacgtgctctacgagccgccccccgaggacgccgagttggccgacgccgtcgcagat
gcggtggcgaacgtcatctcgctcgacccggacggggacgtcctcgtgttcctccccggg
gagcgggagattcgcgaggccgagaatgccctgaacgcgcgcgagctccgcggcacggtg
gtgcagcccctgtatgcgcgcctgtcggccgccgagcagtcgcgcgtcttcgccaccatc
ccccagcgccgggtcatcctcgccaccaacgtcgcggagacgtcggtcaccatcccgggc
atcgtgtacgtcgtggacacgggggtggcgcgcctgtcgcgctacgagccacgctcgggc
accacgcgcctgcacatcgagcccgtctcccaggccagcgccgaccagcgcaaggggcgc
tgcggccgcgtgcgcgagggcatctgcgtgcgcctctacgacgaggtgagcttcaccacg
cggcccgccttcaccgacccggaaatcaagcgcaccgggctcgcgggggtcatcctgcgg
atgaagtcccttggcctcggtgacgtcgaggacttccccttcctcgacccgccccagccg
aaggccatcgccgagggctggcgggtgctcgaggagctcggggccatcgagggcaaggag
cgcaccctgacgccgctcgggcaccagctcgcgcgcttcccggtggacccgcgcatcgcg
cggatgattctcgccggcgtcgagtacgggtgcctggacgaggtgctcatcgtcgccgcg
gcgctcaacctgcaggacccgcgcgagcggccacgggagctcgcgcagaaggcggacgcg
ttgcacgcgcgcttccgtgacgagcactcggacttcacggggctcctcaagctgtgggcc
ttcgtccgcgaggccgagggccgggggacgtcccatctgcggcgcgtgtgccgggacaac
ttcctgtccttcctgcgggtgcgcgagtggcgggacgtccagcgccagctcgaggagacc
gtccgcgagctgcgcctgccgcgcaagggccggggcgccccggcgcgcggggacgtcctg
caccaggcgctgctcaccgggctcctgtcgcgcatcggccagtggaacccggagcagcgc
cactacacgggctcgaagcagacgcgcttcatggtgcacccctcgtcggcgctcgcgaag
aagccccctgcctgggtgatggcgttcgagctcgtggagacgtcccagctcttcgcgcgc
accgtggcgaagctcgacccggagtggctcgccgcggcggccccccacctgctcaagcgc
agctactccgacccgcactggtcggagaagtccgcgcgcgccatcgtgaaggagaacgcg
accctcttcgggctcaccgtcttcagggagcgcccggtgcccctggccagcagggacccc
gccgaagcacggctgatgttcctcgagcacgccctggtgcggggcgagtaccgcacccgg
ggggcgttccaggagaagaaccgccaggtgttcgagcgcgtggcgcgcctgcgggacaag
gcccggcgcagcgagctgctcgacagcgaggcgatgctgaccttcttcgacaagcgcgtc
ccggcggacgtgacggacggagcgggcttcgaggtctggcgtcgcaaggccgaggcggcc
gaccccgacgtgctcgtcctctcgatggaggatgccctctcgcacgacccgggcctgtcc
cccgcccactacccggatgccctcaagctgcacggcgcgtccgtgccggtgacgtacacc
ttcgacccctcggccgaggacgacggcatcaccctgagcgtgccgctgctgctgctcgcc
cagatggggccgggtgagctcgactggaccatccccggttggcagcgggagaaattcacc
gccctgctcgagcagctcccccgcgcccagcgcaagcagcttgggccgttgccggacctg
gtcgacctgctcgcgaaggaactggagcccttccgcgggccgatgattccagcgctcgtg
cgtgcggtgtcccgcctgtgcggcgtggacgtgagcgaggagtccttccgggcggaggcc
gtggtgccgtacctgcgcatcacgctccgggtgctcgacgagaagggaaaggagctcgcg
cggggccgcgacgtcgacgcgctgctcaagcagcacgggggccatgcgcgggcggcgctg
cgcagcgcggccccggcttcggactgggagcgcaaggggctgaccgcgtggaccttcggc
gagctgcccgccgtggtcacccggcggatcggcaacctcgaggtccgcagccatcccgcg
ctcgtcgaccggggcgccaccgtggacctggtgctgctcgagacctccgccgccgcggac
gcggccacgcgcgcgggggtccgccggctcctgatgctcgccgcgcgcgggcacgtggcc
gtcagcgccgcgcgcatgccgccgcccttcccatccctgaacggcgcgccgcccgcgcgg
ggccaggcggacgccttccgggcgctcgtcctcgcacgcggcgtggatgatgcgttcaag
ctcgcgccgggcgcgccgctgccccgcacgaaggcggccttcgaggcgctgctccgagac
ggctcaccgcgcatcgagcaggcggcccgggactgggcgaacgccgtcgtcgtcacctcc
gcggagctctccaagacgctcgccgcgctcaaggcggcatccacggggccgagcggcgcg
gcggccgtgcgggacatccgctcgcagctcgggcagcttttccccgcgaagctcatcgag
tggattcccttctcgcgcctgctgcactacccgcgctatctccgcgcggcccaggcacgg
ctggcgcgtgcggtggcgaaccccggcaaggacgcagggaaggccgcgcccttcacgccc
ctgtgggagaccttcctcaccaggtacgccaccgtgcgtgagcaggaggcggcgcaggag
ctccggtggaccttcgaggagctccgagtggccatcttcgctccggaggtgacgacgccc
gtgtcggtgacggtggcgaaggtcggcgcggccctcgcggcgctgcgctag
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