Corallococcus macrosporus DSM 14697: MYMAC_004120
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Entry
MYMAC_004120 CDS
T05096
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mmas
Corallococcus macrosporus DSM 14697
Pathway
mmas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYMAC_004120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmas03019
]
MYMAC_004120
03016 Transfer RNA biogenesis [BR:
mmas03016
]
MYMAC_004120
Enzymes [BR:
mmas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MYMAC_004120
Messenger RNA biogenesis [BR:
mmas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MYMAC_004120
Transfer RNA biogenesis [BR:
mmas03016
]
Prokaryotic type
tRNA degradation factors
MYMAC_004120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ATB48493
UniProt:
A0A250JXN7
LinkDB
All DBs
Position
complement(5146110..5150369)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSLSPDLLKQLLAEADHPLGIKELLRLAGLHPGQQTELKRTLRELVRQGDILKEGKRFVP
RQPSRREADARAREPGAPEAWRQRTAGGFRDGASGRGARHTPPRVGPGGYAARRQEGDAR
GKGSGWQERGPGRERRGAPKQGGGFRRERAERPGRRGRFSEAEGQDLLEGILHVHRDGFG
FVHPSSGEGDNVFLPPHEAQRALDNDRVVVAVSGRPPRLEGRLVRVVQRRRELAVGTYVV
KGRYAVVYPTDSSLPGPIRVPLTQMAREGDLVKVQLGIGAQMLDPDRGLHGEVAGSLGKP
GTPGAEVLGVAYSQGFSDEFPPEVMSEADRYAVRVSDEEARGEQRRDLRAMPLITIDGED
ARDFDDAVYVEDRPDGWRLVVAIADVSHYVWEGSALNTEALRRATSVYLPDRVLPMLPER
LSNGICSLRPDEDRLCMVADMTYDRRGHRQSHDLYPAVMRSAARCTYNEVQDVLDGKDVP
HRNALKPHFERLMALARALMKMRKERGAIDFDLPEHKVVLGEDGLPERMDKRERKDSHRL
IEECMLAANEAVAMFFQDEGLPTVYRFHGEPDPEKLATFAALAEAYGFKMRVEDGVASKE
LDAFISQLQGHPEQRALNQLLLRSMMQAIYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLV
HRLLKAHWARRGRKPSPSMLEREEDQLEDMAAQCSERERAAMQVEREVVSFYACLMMKDR
VGEEFAATVAAITDFGFFVELDEEHVEGLVKAETLGPGAKLDKLTHSLVYANGRRVRVGQ
KLRVRLTSVNVTAKKIDFEALQFEGEAPLSRAGTAGAQPHRRQAWMAEAPSHRERGGRRE
QREQRPGRREREAAGRGPSQGTREEMDAGRPRGRFSRDGRREEAAPHRNEPRFPPRAPEG
QGTQPTESPAWSKRRTFIRPEPPVAAPVAETAAPRPPEAPSAPAPWEVPTGEEGARSPHP
GFDRIRALAAQRHGGADTRGAGPGRPHAKQKPQGGPGPRYPAPKPRPPSEDGKAFSMEPP
RPPPEDEQAFSMEPPRPQPEARVEAPARVLAPAHVKAEPAAPTPVAEGPVSSAPTRVDRP
KAAEPANEAPAQKGQAAEVKSAALKAERTPPRQEVGEGASRNAKDKNAAPTQAATAAGAK
AAVSAPAKKAAGVKAAVSAPAKKAAGTAAVSTPAKKAAGTAAVSTPGKKAARKAQVQVPA
KKAAGTAAVSTPGKKAVTSKATVSAPAKKAAAPEAQVKVSAKQAIASRATANVPAKKAVT
SKATVSAPAKKAAAPEAQVQVPAKQATASRATVNVPAKKAVTSKATVGAPAKKAAAPEAQ
VKVSSKEAAAPKAPVKVPTKKAAAPEAQVKVSSKEAAAPKAPVKVPTKKAAVPKAQVKVP
AKQAKASGAAKQAKASGAAKQAKASGAAKKQGPSGSKKR
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctttctccagatctcctcaagcagctcctcgcagaagcagaccacccgctgggc
atcaaagagcttctccggctcgcgggcctgcaccctggacagcagacagagctcaagcgc
accctgcgcgagctcgtccgccagggcgacatcctcaaggaaggcaagcgcttcgtgccc
cggcagccctcgcggcgcgaggccgacgcgcgcgcccgggagccgggtgctcctgaggcg
tggcgtcagcggaccgctggtggcttccgcgacggcgcctccggccgaggcgcgcggcac
acgcctccccgcgtggggcccgggggctatgcggcccgccggcaggaaggggacgcgcgc
ggcaagggctcgggctggcaggagcgcggcccagggcgtgagcgccggggggccccgaag
cagggaggtggcttccggcgggagcgggcggagcggcccggccgccgcgggcgcttcagc
gaggccgagggacaggacctgctggaaggcatcctccacgtccaccgtgacggcttcggt
ttcgtgcacccgtcgtcgggggagggggacaacgtcttcctgccgccgcacgaggcgcag
cgcgcgctcgacaatgaccgggtggtggtggccgtctccgggaggcctcctcgcctggag
ggccggctcgtccgcgtggtgcagcgccgccgcgagctggcggtgggcacctacgtggtg
aagggccgctacgcggtggtgtaccccacggactccagcctgccgggccccatccgcgtg
ccgctgacgcagatggcgcgcgagggtgacctggtgaaggtccaactgggcatcggcgcc
cagatgttggatccggaccggggcctgcacggcgaggtggccggctccctgggcaagcct
ggaacgccgggcgcggaggtgctgggcgtcgcctactcgcagggcttctccgacgagttc
ccgccggaggtcatgagcgaggcggaccgctacgcggtgcgggtgtcggacgaggaggcc
cgcggcgagcagcggcgcgaccttcgcgcgatgccgctcatcaccatcgacggtgaggac
gcccgcgacttcgacgacgccgtctacgtggaggaccggccggacgggtggcggctggtg
gtggccatcgcggacgtgtcgcactacgtgtgggagggcagcgcgctcaacacggaggcg
ctgcgccgggccacgtccgtgtacctgccggaccgggtgctgcccatgcttccggagcgg
ctgagcaacggcatctgctccctgcgcccggacgaggaccggctgtgcatggtggcggac
atgacgtacgaccgccgcggccaccgccaatcccatgacttgtacccggcggtgatgcgc
agcgcggcgcggtgcacgtacaacgaggtgcaggacgtcctcgacggcaaggacgtgccg
caccgcaacgcgctcaagccccacttcgagcggctgatggcgctggcccgcgcgctgatg
aagatgcgcaaggagcggggcgccatcgacttcgacctgcccgagcacaaggtggtcctg
ggcgaggacggcctgcccgagcgcatggacaagcgcgagcgcaaggacagccaccggctc
atcgaggagtgcatgctcgccgccaacgaggcggtggccatgttcttccaggacgagggc
ctgcccacggtgtaccggttccacggcgaaccggacccggagaagctggccaccttcgcg
gcgctggcggaggcctatggcttcaagatgcgcgtcgaggacggcgtggcgtcgaaggag
ctggatgccttcatcagccagctccaggggcacccggagcagcgagccctgaaccagctc
ctgctgcgctccatgatgcaggccatctacacgtcgtcgcgcgtgggccactacggcctg
gccgccgagcactacctgcacttcacgtcgcccatccggcgctacccggacctgttggtg
caccggctgctcaaggcgcactgggcccggcggggccgcaagccttcaccgtcgatgctg
gagcgcgaggaggaccagctcgaggacatggccgcgcagtgctccgagcgcgagcgcgcg
gcgatgcaggtggagcgggaggtggtgtccttctacgcgtgcctgatgatgaaggaccgc
gtgggcgaggagttcgccgccacggtggcggccatcaccgacttcggcttcttcgtcgag
ctggacgaggagcacgtcgaaggcctggtgaaggcggagacgctggggcccggcgcgaag
ctggacaagctgacgcactccctggtgtacgcgaatggccgccgcgtgcgggtggggcag
aagctgcgcgtgcggctgacgtccgtgaacgtgacggcgaagaagatcgacttcgaagcg
ctccagttcgagggcgaggcgccactgagtcgcgccgggacggcgggtgcgcagccgcac
cggcgtcaggcgtggatggccgaggcgccttctcatcgcgagcggggcggacggcgggaa
cagcgcgagcagcgcccggggcgccgggaacgcgaagccgcgggccgggggccttctcaa
gggactcgtgaggagatggacgcgggacgtccgcgtgggcggttctctcgcgatggtcgt
cgcgaggaggccgcgcctcaccggaatgagccgcgcttcccacccagggctcccgaggga
cagggcacgcagccgaccgagtcaccggcgtggtccaagcgcaggacgttcatccgcccg
gagccgcccgtcgcggcgcccgtcgccgagacagccgcaccacggccgcctgaagcgccg
tccgcgcccgctccgtgggaggtgcccacgggcgaggagggggcccggtctccacacccc
ggcttcgaccggattcgcgcgctggccgctcagcggcacggtggggccgatacccgcggc
gcgggacctggccggccgcacgcgaagcagaagccacagggcggacccgggcctcggtac
cccgcgcccaagcccaggcccccgtccgaggacggcaaggccttctcgatggagcctcca
cgccctccgcctgaggacgagcaggccttctcgatggaaccgccgcgtcctcagcccgag
gcacgcgttgaagcacccgcgcgcgtgctcgcgcccgcccacgtcaaggccgagccagcg
gctcccacgccagtggcggaggggcccgtttcgtccgcgcccacccgcgtcgacaggccc
aaggccgccgagccagcgaatgaggctccggctcagaaggggcaggctgccgaggtgaag
tcggcggcgctgaaggccgagcgaactccgcctcgacaggaggtcggggagggtgccagc
aggaatgccaaggacaagaatgcggctcccacgcaggccgccacggctgctggagcgaag
gcggcggtaagtgcgcccgcgaagaaggccgctggagtgaaggcggcggtaagtgcgccc
gcgaagaaggctgctggaacggcggcggtaagtacgcccgcgaagaaggctgcgggaacg
gcggcggtaagtacgcccgggaagaaggctgcgcggaaggcccaggtgcaggttcccgcg
aagaaggctgcgggaacggcggcggtaagtacgcccgggaagaaggccgttacgtcgaag
gcgacggtaagtgcgcccgcgaagaaggctgctgcgccggaggcccaggtaaaggtgtct
gcgaagcaggccattgcgtcgagggcgacggcaaatgtgcccgcgaagaaggccgttacg
tcgaaggcgacggtaagtgcgcccgcgaagaaggctgctgcgccggaggcccaggtgcag
gttcccgcgaagcaggccactgcgtcgagggcgacggtaaatgtgcccgcgaagaaggcc
gttacgtcgaaggcgacggtaggtgcgcccgcgaagaaggctgctgcgccggaggcccag
gtaaaggtgtcctcgaaggaggccgccgcgccgaaggccccggtgaaggtgcccacgaag
aaggctgctgcgccggaggcccaagtaaaggtgtcctcgaaggaggccgccgcgccgaag
gccccggtgaaggtgcccacgaagaaggctgctgtgccgaaggcccaggtgaaggtgccc
gcgaagcaggcgaaggcgtcgggcgccgcgaagcaggcgaaggcgtcgggcgccgcgaag
caggcgaaggcgtcgggcgccgcgaagaagcaggggccttccgggagcaagaagcgctga
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