Mycolicibacterium mageritense: MMAGJ_03440
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Entry
MMAGJ_03440 CDS
T07395
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmat
Mycolicibacterium mageritense
Pathway
mmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMAGJ_03440 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmat03019
]
MMAGJ_03440 (deaD)
03009 Ribosome biogenesis [BR:
mmat03009
]
MMAGJ_03440 (deaD)
Enzymes [BR:
mmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMAGJ_03440 (deaD)
Messenger RNA biogenesis [BR:
mmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMAGJ_03440 (deaD)
Ribosome biogenesis [BR:
mmat03009
]
Prokaryotic type
rRNA helicases
MMAGJ_03440 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
P-loop_SecA
Cas3-like_C_2
Flavi_DEAD
adh_short
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
BBX31062
LinkDB
All DBs
Position
complement(347424..349166)
Genome browser
AA seq
580 aa
AA seq
DB search
MTSPESDPNPDSNPDPVDTDPTFADLHIHPAVLQAVADVGYETPSAIQAATIPPMLAGSD
VVGLAQTGTGKTAAFAIPILSKIDTTSRNTQALVLAPTRELALQVAEAFGRYGAHLPEIN
VLAIYGGSSYGPQLAGLKRGAQVVVGTPGRVIDHLEKGRLDLSHLDYLVLDEADEMLQMG
FAEDVERILADTPEYKQVALFSATMPPAIRKITTKYLHDPVEVTVKAKTATAENITQRFI
QVAGPRKLDALTRVLEVEPFDAMIVFVRTKQATEEVAERLKARGFSAAAINGDIAQAQRE
RTIAALKDGKLDILIATDVAARGLDVERISHVVNYDIPHDVESYVHRIGRTGRAGRSGVA
LLFVTPRERHLLKSIEKHTRSRLIESELPSVDDVNAQRVAKFRDSITDGLNAPGLELFRR
LIEDYGRDNDVPMADIAAALALQSRDGDAFLMVEPPPEKRREREERGERSERPPRAPREG
LATYRIAVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDHSLVELPEKLSKKTLKAL
ENTRISGVLINLQPDRPQRRERPEHRDRPGGSGKPRRKAK
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgccagaatcggatccgaacccggattccaacccggatccggttgataccgac
cccacgttcgccgacctgcacattcaccccgcggtgctgcaggcggtggccgatgtcgga
tacgagacgccgtcggcgatccaggctgccacgatcccgcccatgttggcgggctccgat
gtggtgggtctcgcccagaccggcacgggcaagacggcggcgttcgcgatcccgatcctg
tccaagatcgacaccaccagcaggaacacccaggcccttgtgctcgcgccgacgcgtgag
ctggccctgcaggtcgccgaggcgttcggccggtacggtgcgcacctgcccgagatcaat
gtgctggcgatctacggcggctcgtcgtacggcccgcagctggccgggctcaagcggggt
gcccaggtggtggtcggtacgcccggccgggtgatcgaccacctggagaagggccggctg
gacctgtcgcacctggactacctggtgctcgacgaggccgacgagatgctgcagatgggg
ttcgccgaggatgtcgaacgcatcctggccgacacccccgagtacaagcaggtggcgctg
ttctcggcgaccatgccgccggcgattcgcaagatcaccacgaaatatctgcatgacccg
gtcgaggtcacggtcaaggccaagacggcgacggccgagaacatcacgcagcggttcatc
caggtcgcgggtccgcgcaaactcgatgcgctgaccagggtgctggaagtcgagccgttc
gacgcgatgatcgtgttcgtccgcaccaagcaggccaccgaagaggtcgccgaacggctc
aaggcgcgcggtttctcggctgcggccatcaacggcgacatcgcgcaggcgcagcgtgag
cggaccatcgccgcgctcaaggacggcaagctcgacatcctgatcgccaccgatgtggcc
gcgcgcggcttggacgtcgaacgcatctcgcacgtcgtcaactacgacatcccgcacgac
gtcgagtcgtacgtgcaccgcatcggccgcaccggccgagcgggccggtccggtgtggcg
ctgctgttcgtcaccccgcgggaacggcacctgctcaagtccatcgagaagcacacccgg
tcgcggctcatcgagtccgagttgcccagcgtggacgacgtcaacgcgcagcgcgtcgcg
aagttccgcgactcgatcaccgacgggctcaacgctccgggcctcgagctgttccgccgc
ctgatcgaggactacgggcgtgacaacgacgtgccgatggccgacatcgcggcggcgctc
gcgttgcagtcgcgcgacggcgacgcgttcctgatggtcgagccgccgccggagaagcgc
cgcgagcgcgaggagcgcggtgaacgcagtgagcgcccgccccgcgcaccccgcgaaggt
ctggccacctaccgcatcgcggtgggcaagcggcacaaggtcgggccgggccacatcgtc
ggggcgatcgccaacgagggcggcctgcaccgcaacgagttcggccacatcaccatcagg
ctcgaccattcgctggtcgaactgcccgagaagctgtccaagaagacgctcaaggcgctg
gagaacacccgcatctcgggcgtgctgatcaacttgcagccggaccggccgcagcgccgc
gaacgtccggagcaccgagaccgaccggggggctcgggtaagccccgccgcaaggccaag
tga
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