Mycolicibacterium mageritense: MMAGJ_07270
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Entry
MMAGJ_07270 CDS
T07395
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmat
Mycolicibacterium mageritense
Pathway
mmat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMAGJ_07270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmat03400
]
MMAGJ_07270 (mfd)
Enzymes [BR:
mmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMAGJ_07270 (mfd)
DNA repair and recombination proteins [BR:
mmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMAGJ_07270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
LSDAT_prok
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBX31445
LinkDB
All DBs
Position
complement(747513..751145)
Genome browser
AA seq
1210 aa
AA seq
DB search
MTAPGHNHVQTPIAGLVELALTAPTFTELIARAADRPADLALVGPASSRVLVASALAKTG
PLLVVAATGREADDLTAELRGVLGDAVALFPSWETLPHERLSPGVETVGARLLLLRRLAH
PDDARLGPPLRVIVTTARSLLQPMSPDVIDIEPVTLTLGAEAEFDDVIARLVGLAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEVSEMRMFSIADQRSIPEIPVESVVAV
PCRELLMTADVQERAAALSAEHPTNDNSVPGSVPDMLAKLAEGIPVDGMEALLPLLHPVE
PTTLTTHLPDGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDIESLGAS
GFVPFAEARDAARAGGHPWWTLSQLSDGDATELDLRPAPSARSQQSLEEIFAMLRAHVAT
GGFAAIVTPGTGTAHRVVEQLGESDTPAAILESGEAPKAGVVGVLKGPLHDGVILPGANL
VIITETDLTGNRVTASEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKARR
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETIDQLTAITEVKADMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTTRMAGFPVT
VKGLSRFTDPAESRAVMEGMKDGSVDIVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDEKQVA
AALRRELLRDGQAFYIHNRVRSIDQAAARIRQLVPEARVVVAHGQMNEETLEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPE
VPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAADGKTVAAPEEPKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAASDET
AVAAVVDELVDRYGPLPEPAQRLVAVARLRLLCREYGITDVGAVSASTIKLSPVVLPDSA
QLRLKRVYPGGHYRATTSTVQVPIPRAGDGVGSPRIRDLELVQMVAGLVLVLNGKSPADF
DIAAKFNSSS
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacaaccatgtccagaccccgattgcggggctggtcgagctggca
ctgaccgcaccgaccttcaccgaactcatcgcgcgcgccgccgatcggcccgccgatctc
gcgctggtcggcccggccagttcccgcgtgctggtggcctccgcgttggccaagaccggc
ccgctgctggtggtcgccgcgaccggccgggaggccgacgacctcaccgccgagctgcgc
ggtgtcctcggcgacgccgtcgcgctgttcccgtcctgggagaccctgccgcacgagcgg
ctgtcacccggggtggagacggtcggggcccggttgctgttgctgcgccggctggcccat
cccgacgacgcgcggctcgggccgccgttgcgggtcatcgtgaccacggcccgctcgttg
ctgcaaccgatgtcacccgacgtgatcgacatcgagcccgtgacgctgacgctgggcgcc
gaggccgagttcgacgacgtcatcgcccggctcgtcggtctcgcctacacgcgtgtcgac
atggtcggcaaacgcggcgagttcgcggtccgcggcggcatcctcgacctcttcccgccg
accgccgagcatcccgtgcgcgtcgagttctggggcgacgaggtctcggagatgcgcatg
ttctccatcgccgaccagcgctcgatcccggagatcccggtcgagtccgtggtggccgtg
ccgtgccgcgagctgctgatgacggccgatgtacaggagcgggccgcggctctgtccgcc
gagcacccgaccaacgacaacagcgtgccgggcagcgtgccggacatgctcgccaagctc
gccgagggcatcccggtggacggtatggaggcactgctgcccctgctgcatccggtcgag
ccgacgacgctgacgacccatctgcccgacggcgccccggtgctcgtgtgcgacccggag
aaggtccggacccgcgctgccgatctgatcaagaccggccgtgagttcctggaggcgtcg
tggtcgacggctgcggtcggcggggacgtcccgatcgacatcgagtcgctcggtgcatcc
gggttcgtcccgtttgccgaggcccgcgacgcggcgcgcgccggcggacacccgtggtgg
acgctcagccagttgtccgacggcgacgccaccgagctcgacctgcgcccggccccgtcg
gcgcgcagccagcagagcctcgaagagatcttcgcgatgctgcgcgcacacgtcgccacc
ggcgggttcgcggccatcgtcacgccgggtaccggtaccgcgcaccgcgtggtcgagcag
ctcggtgaatccgacactcccgcagcgatcttggagtccggcgaggcgccaaaggccggt
gtggtcggcgtgctcaagggaccgctgcacgacggcgtgatcctgccgggcgcgaacctc
gtgatcatcaccgagacggatctgaccggcaaccgggtcaccgcgagtgaaggcaaaaag
cttgcggccaaacggcgtaacgtcgtcgacccgctcgcgctgaccgccggcgacctcgtc
gtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgcgtcgtcggcggt
gcccgccgcgagtacctggtgctcgagtacgcgtcggccaaacgcggtggtgggtcggac
cggctgtatgtgcccatggattcgctcgaccagctgtcgcgttatgtcggcggggaggcg
ccgtccctgtcgcggctcggcggcagcgattgggccaacaccaaaaccaaagcgcgccgg
gcggttcgggagatcgccagcgaactcgtggcgctctatgccaagcgtcagtccgcgcca
gggcatgcgttcggcccggacacgccgtggcagaacgagatggaggatgcgttcgggttc
accgagaccatcgatcagttgacggccatcaccgaggtcaaggccgacatggagaagccc
gttccgatggaccgcgtgatctgcggcgacgtcgggtatggcaagaccgagatcgcggtg
cgcgcggcgttcaaggccgtgcaggacggcaagcaggtggccgtgctggtgccgacgacg
ctgctggccgatcagcacctgcagacgttcaccacccggatggccggtttccccgtgacg
gtcaagggtttgtcgcggttcaccgatcccgccgaatcgcgcgccgtgatggagggcatg
aaggacggctcggtcgacatcgtgatcggcacccaccggctgttgcagaccggcgtgacg
tggaaagacctggggctcatcatcgtcgacgaggaacagcggttcggcgtcgagcacaag
gagcacatcaagtcgatgcgcacgcacgtcgacgtgctgaccatgagcgcaacgccgatc
ccacgcacgttggagatgagcctggccggcattcgggagatgtcgacgatcctcacgcca
cccgaagagcgttatcccgtgctgacctacgtgggtccgcacgacgagaagcaggtggcg
gccgcgttgcgccgtgagctgctgcgggacggccaggcgttctacatccacaaccgtgtg
cggtcgatcgaccaggccgcagccaggattcgtcagctcgtccccgaagcacgcgtcgtc
gtcgcgcacgggcagatgaacgaggaaaccctggagaagacggtcgaggggttctggaac
cgggagtacgacatcctggtgtgcacgacgatcgtcgagacgggactggacatctcgaat
gccaacacgctgatcgtcgagcgcgcggacacgttcggcttgtcgcagctgcatcagttg
cggggccgggtgggccgcagccgggagcgcgggtatgcctacttcctctatccgcccgag
gtgccgctgaccgagacggcctatgaccggctggccaccatcgcgcagaacaacgagctc
ggcgcgggcatggcggtcgccatgaaggatctcgaaatccgcggcgcgggcaacgttttg
ggtgtcgagcagtccggtcacgttgcgggcgttggcttcgacctgtacgtgcggctggtc
ggtgaggccgtcgaggcctaccgtgccgccgcggacgggaaaaccgttgcggcaccggaa
gagccgaaggaggtgcgggtcgatctgcccgtcgacgcgcacctgccgcccgagtacatc
ggcagcgaccggttgcgcctcgagggctaccggcgcctggccgccgcgtccgacgagacc
gccgtggctgccgtggtggacgagctcgtcgaccggtacggtccgctgcccgagccggcg
cagcgcctggtcgcggtcgcgcggctgcggctgttgtgccgcgaatacggcatcaccgac
gtcggagcggtatcggcgtcgaccatcaagctctccccggtggtactgccggattccgcg
caattgcggctcaaacgcgtgtatccgggtggacactaccgcgcgacgacctcgaccgtg
caggtgcccatcccgcgggccggtgacggcgtcggatcaccccgcatccgcgatctcgag
ctggtgcagatggttgcgggtctggtgctggtgctcaacggcaagtcgcccgccgacttc
gacatcgccgcgaaattcaattcctcgtcctga
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