Mycolicibacterium mageritense: MMAGJ_42210
Help
Entry
MMAGJ_42210 CDS
T07395
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmat
Mycolicibacterium mageritense
Pathway
mmat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMAGJ_42210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmat03021
]
MMAGJ_42210 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmat03400
]
MMAGJ_42210 (rpoC)
Enzymes [BR:
mmat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMAGJ_42210 (rpoC)
Transcription machinery [BR:
mmat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMAGJ_42210 (rpoC)
DNA repair and recombination proteins [BR:
mmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMAGJ_42210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBX34939
LinkDB
All DBs
Position
4343195..4347148
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVDEEMRHNELSTLEAEMAVERKAVEDQRDSDLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLEEIWNTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLRDVIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTEVEGDTGEYV
AAGTDSPEQGVYSSPAEAIMALDRGALSVRAKIKVRLTDLRPPADIEAAQFPNGWRHGDA
WVAETTLGRVLFNELLPHGYPFVNEQMHKKVQARIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQDA
TEEVGKALEEYYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVHL
AERAADGSLIRDAHVETSAFARTLATDAVDADGNVIVERGHDLGDPAIDALLAAGITQVK
VRSVLTCASATGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARIPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYDK
LTKRQRLKVITHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP
AGTGIARYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggcctcgccaccgcggacgacatc
cgtaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgaaaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgtgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcaccggcgtggac
gaggagatgcggcacaacgagctgtcgacgctcgaggccgagatggccgtcgagcgcaag
gccgtcgaggaccagcgtgactccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagctccgcgaccgggcccagcgtgagctggatcggctcgag
gagatctggaacaccttcaccaagctggctcccaagcagctcatcgtggacgaggtgctc
taccgcgagctgcaggaccgctacggcgagtacttcacgggcgccatgggcgcggagtcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagtcgctgcgtgacgtc
atcaagaacggcaagggccagaagaagctgcgggcgctcaagcgcctgaaggtcgtcgcg
gccttccagcagtccggcaactcgcccatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgactgatcgatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccgtccggtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccggcagaacctgctgggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcgctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacctacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggcgcaggccgaggcccgcattctcatgctg
tcgtcgaacaacatcctgtccccggcgtcgggcaagccgctggccatgccgcgtctggac
atggtgaccggtctgtacttcctgaccaccgaggtcgagggggacaccggcgagtacgtc
gcggccggtacggattcgcccgagcagggtgtgtacagcagcccggccgaggccatcatg
gcgctcgaccgcggtgcgctgtcggtgcgcgccaagatcaaggtgcggctgaccgatctg
cgtccgcctgccgacatcgaggccgcgcagttcccgaacggctggcgccacggagacgcc
tgggtcgccgagacgacgctgggtcgcgtgctgttcaacgagctgctgccgcacgggtat
ccgttcgtcaacgagcagatgcacaagaaggtccaggcccggatcatcaacgacctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgttcgggtgtcaccgtgtcgatggccgacgtgctggtgccgccgcag
aagcaggagatcctggagcggcacgaggccgaggccgacgcgatcgagcgcaagtaccag
cgtggtgccctcaaccacaccgagcgcaacgagtcgctggtcaagatctggcaggacgcc
accgaagaggtcggtaaggctctggaggagtactaccccgcggacaacccgatcatcacg
atcgtgaagtcgggcgccacgggtaacctcacccagacccgcaccctggcaggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcggcccatcaagtcgtcgttccgt
gagggcctgacggtgttggagtacttcattaacacccacggtgctcgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtgagaccgagcgtggtatcacggtgcacctg
gccgagcgtgccgccgacggttcgctgatccgcgatgcgcacgtcgagacctcggcgttc
gcgcgcaccctggccacggacgcggtcgacgccgacggcaacgtgatcgtcgagcgcggc
cacgacctgggtgacccggccatcgacgcattgctcgcggccggcatcacgcaggtgaag
gtccgctcggtgctgacctgcgcctcggccaccggggtgtgtgcgaagtgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggtgttacc
ggtggtgccgacatcgtcggtggtctgccccgcgtgcaggagctgttcgaggcccgcatc
ccgcggaacaaggcgcccatcgccgacgtcgcgggccgggtgcggctggaggagagcgac
aagttcttcaagatcaccatcgttcccgacgatggcggcgaggaagttgtctacgacaag
ctcaccaagcgtcagcgcctgaaggtcatcacccacgaggacggctcggagggcgtgctc
tccgacggcgaccacgtcgaggtcggcgaccagctgatggaaggctccgccgatccgcac
gaggtgctgcgtgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgggcccagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggctcgacggagttcctgcccggttcg
ctgaccgagcgtgccgagttcgaggccgagaaccgtcgcgtcgtggccgagggcggcgag
cccgcggccggacgtccggtgctcatgggcatcaccaaggcatcgctggccacggactcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggccatcaac
tgccgcagcgacaagctgaacggtctgaaggaaaacgtgatcatcggcaagctgatcccg
gccggtaccggcatcgcccgttaccgcaacatccaggtgcagccgaccgaggaagcccgc
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggtgccgcggtgccgctggacgattacggctactcggattaccgctag
DBGET
integrated database retrieval system
