KEGG   Methanolobus mangrovi: RE476_12380
Entry
RE476_12380       CDS       T09569                                 
Name
(GenBank) exosome complex RNA-binding protein Csl4
  KO
K07573  exosome complex component CSL4
Organism
mmav  Methanolobus mangrovi
Pathway
mmav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RE476_12380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmav03019]
    RE476_12380
Messenger RNA biogenesis [BR:mmav03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     RE476_12380
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     RE476_12380
SSDB
Motif
Pfam: ECR1_N EXOSC1 HypA TackOD1 Prok-RING_1 DZR DZR_2 Trm112p Auto_anti-p27
Other DBs
NCBI-ProteinID: WMW22149
UniProt: A0AA51UFT4
LinkDB
Position
complement(2528627..2529352)
AA seq 241 aa
MKGPEATGAPKELTKGSAKDEKEQIRSSEAGKKNMKPAKGSTEDDEMDTEDDVSTEESVF
VMPGDFVGTTEEFVAGNGTYVNVADIHSLSTGYVKIDKKSRTISIVPQTSTPPEIAEGDI
IVGNVVNMRDSVALVEIGAIKGKGEREFQTNGAAAIHVSNVKDSYVKNLGQEFALSDIVK
AKVINTQNMRLSTDGETLGVMKAYCSRCRSDLVKDNNRLKCPECGRVERRKISSEYGTGI
F
NT seq 726 nt   +upstreamnt  +downstreamnt
gtgaaaggaccggaggctactggtgcaccgaaagagctcacaaagggttccgcaaaagat
gaaaaggaacagattcgaagcagtgaagcaggaaagaagaatatgaaacccgcaaaaggg
tctacggaagatgatgaaatggacacagaagacgacgttagcacagaagaaagtgttttt
gtaatgcccggcgattttgtaggaactacagaagaattcgtggcaggtaatggaacctat
gtcaacgtggcagatatccattcactcagtaccggatacgtaaagatagacaagaaatca
aggactatttccattgttccccagacaagcactccccctgagattgctgaaggagacatc
attgtgggaaatgtcgtcaatatgcgtgattcagtcgctcttgttgaaataggagctatc
aaaggcaagggagagcgtgaattccagacaaatggtgcagcagccatccacgtttctaac
gtaaaggattcctatgtcaagaatcttggccaggagtttgccctttcagatatagtaaag
gcaaaagtaattaatacccagaacatgcgtctgagcacggatggcgagacccttggcgta
atgaaggcatattgttcaagatgcagatcggatcttgtgaaagacaacaacagattgaaa
tgtccggaatgcgggcgcgtagaaagaaggaagatctcttctgaatacggaaccggaata
ttctaa

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