Megasphaera massiliensis: LCQ47_00735
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Entry
LCQ47_00735 CDS
T07781
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmax
Megasphaera massiliensis
Pathway
mmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCQ47_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmax03019
]
LCQ47_00735
03009 Ribosome biogenesis [BR:
mmax03009
]
LCQ47_00735
Enzymes [BR:
mmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCQ47_00735
Messenger RNA biogenesis [BR:
mmax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCQ47_00735
Ribosome biogenesis [BR:
mmax03009
]
Prokaryotic type
rRNA helicases
LCQ47_00735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_30
UvrA_inter
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UBS53738
LinkDB
All DBs
Position
complement(171251..172822)
Genome browser
AA seq
523 aa
AA seq
DB search
MLEKFQNLNISEVIIRALNEMGFEEPTPIQSESIPVAMSGSDMIGQAQTGTGKTAAYGIP
VLEKILKAEPSKEIQTVVLSPTRELAMQVAEELNHLAQFTNIQALPIYGGQDMERQLRRL
RKSPQIIVATPGRLIDHMKRGTIDLSHIATIVLDEADEMLDMGFIDDINLIMAATPNTRQ
TLLFSATMPKPIRQLAETFLHDPLMIRMKTKEVTMDLIEQSYIEVPDRQKFDILCRLLDL
QEPDLAIIFVRTKRRVDEVSEALKKRGYSSEGIHGDLTQAKRDTVIRQFREKTIDILVAT
DVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREMEHLRTIER
LIKRSIARRKAPTFSEALEGAQQAAIRNLAATAEEGNFGSYKENAEELLSNYDSASLVAA
AIKLLTKEPDTTPVKITEEAPLRVHRSRQGKNNRDRNYRRNDRNRKDRRNGKEDGQERGE
RRRHFAPKNRDSNNHGTFRNNQRSEKKQHKEPNRSVFKPYFKD
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgttagagaaattccaaaatttaaatatcagcgaagtcattatccgtgccctgaacgaa
atgggttttgaagaaccgacgccgatccagtccgaatcgattcccgtcgccatgagcggc
tccgacatgattggccaggcccagaccggtaccggtaagactgctgcctacggcattcct
gtcctggaaaaaatattgaaggccgaaccttccaaagaaattcagaccgtcgtcttatcc
ccgacccgtgaacttgccatgcaggtcgccgaagaactgaaccacttggctcaattcacc
aacatccaggccctgcccatctacggcggtcaagatatggaacgccagctgcgccgcctg
cggaaaagcccgcagatcattgtcgccaccccgggccgcctcatcgaccacatgaagcgc
ggcaccatcgacttgagccacattgcgaccatcgtcctcgacgaagccgatgaaatgctg
gacatgggctttatcgatgacatcaacctcatcatggcagcgacgcccaacacgcgccag
accctgctcttctcggcaaccatgccgaaaccgatccgacaattggccgaaaccttcctt
cacgatcccctcatgattcgcatgaagaccaaagaagtcaccatggacctcatcgaacag
tcgtacattgaagtaccggatcgccagaagttcgacatcctctgccgtctcctcgacctg
caggaaccggatttggccatcatcttcgtccgcaccaaacgccgcgtcgacgaagtctca
gaagccttaaagaaacgcggctactcgtcggaaggcatccacggcgacctgactcaggcc
aagcgcgataccgtcatccgccagttccgcgaaaagacgattgacatcttagtcgctacc
gacgtcgccgcccgcggcctcgacatcagcggtgtcacccatgtcttcaactacgacctg
ccccaggacccggaaagctacgtccatcgcgtcggccgtaccggtcgtgccggccagagc
ggtgaagctacgaccttcgtcattccccgtgaaatggaacacctgcgcactatcgaacgc
ctcattaagcgcagcatcgcccgccgcaaagcaccgaccttctccgaagccttagaaggc
gcccagcaggcagccatccgcaacctggccgctaccgcagaagaaggcaatttcggcagc
tacaaagaaaatgccgaagaacttctgtccaactatgactcggcgtccctcgtcgcagcc
gctatcaagctgctcacgaaagaaccggacacgacgcccgtcaaaattaccgaagaagcc
cccctccgcgtccatcgcagccgccaagggaaaaataaccgcgaccgcaactatcgccgt
aacgaccgcaatcggaaagaccgccgtaacggtaaagaagacggccaagaacgaggcgaa
cgccgtcgtcacttcgctcctaaaaaccgcgactccaataaccacggcaccttccgcaac
aaccagcgctccgaaaaaaaacaacataaagaaccgaatcgctccgtattcaagccttac
ttcaaagactga
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