Megasphaera massiliensis: LCQ47_06045
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Entry
LCQ47_06045 CDS
T07781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmax
Megasphaera massiliensis
Pathway
mmax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCQ47_06045 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmax03021
]
LCQ47_06045 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmax03400
]
LCQ47_06045 (rpoC)
Enzymes [BR:
mmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCQ47_06045 (rpoC)
Transcription machinery [BR:
mmax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCQ47_06045 (rpoC)
DNA repair and recombination proteins [BR:
mmax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCQ47_06045 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UBS54784
LinkDB
All DBs
Position
complement(1276140..1280363)
Genome browser
AA seq
1407 aa
AA seq
DB search
MRIGLASPEKILEWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECHCGKYKRIR
YKGVVCDRCGVEVTHAKVRRERMGHIKLATPVSHIWYFKGIPSRMGLILDISPRSLEKVL
YFASYIVLDPGDTSLQKQQLMTETEYRQYLDLYGDKFRVGMGAAAIKELLQGLDLDQLDK
ELRDELRDSSGQRRVRAIRRLEVVEAFRHSGNKPEWMVMDVIPVIPPELRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLSRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEMKMHQCGLPKEMALELFKPF
VMKKLVEKEIATNIKNAKKKVERVSNEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPV
LWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQSEARTLMLSSHNILAPKDGKPVA
VPTQDMVLGAYYLTLVKPSAKGEGKIFSNYDEVMLAYDAKVIDIEALIKVRIPGHGLIET
TAGKLLYNYQIYEPLRLFHTDKVMVFDNPQDVVFAYENGVIDWTHFIKVKDADGHILDYG
FSQLKEAFGVDLMAVRPLPKHKIDKDAVAAFKEGKEYVDVDCLGVLMSKKEIGKLVDACF
HLFGNTKTAELLDNIKAIGYHYARQAGMSIAISDIQIPEEKWDILGAADKQVQNVSKMYQ
RGLITEDERYRKTCAIWEKATDDVTEVMMDNMDPFNSIFMMADSGARGNKQQIRQVAGMR
GLMADPSGRIIDLPIKANFREGLSVLDYFTSSHGARKGLADTALRTADSGYLTRRLVDVS
QDVIVREDDCDVFGIDLVRERARLASSCRQAVNLLRDKLIGRVLAREAVDPETGEAVFEA
EHLLTNDDMDTIIEHQVPKLYLRGSQMDINDDLNHTNVIETVSLGAPEEGFRAAIRKSMA
ENMLGKTIEEAVIDSNGIEICAKGTPLTEDAIDRILNSDVKEVKARNNDIRGVEVTAIVE
GNGVIEPLEERIEGRTAAETLVNPETGAVIVALNEEIMADQAKEIAKYYDTVRIRSVLTC
HSRYGVCAKCYGRDLGTGGKVNVGESVGTIAAQSIGEPGTQLTMRTFHTGGVASAGDITQ
GLPRVEELFEARKPKGNAIVTEISGTVSITEKEDHHDINIVHVLSKDGEERSYTIPFGSH
LVVHEGDVIEKGSRITAGSINPHDILRIQGVEATQRYLVYEVQKVYKSQGVGINDKHIEV
IVRQMLRKMKIEEAGDADVLPGDYIDVNIFEDMNKRIANNGGKTAIGKPMLLGITKAALA
TDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENVIIGKLIPAGTGMSRYRKVKVVKTV
PSISYEDEDGNPVDAPESVVEAPEAGH
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgcggattggccttgcttcgcccgaaaagattctcgaatggtctcatggggaagtcaag
aaaccagaaacgatcaactaccgtacattaaaaccggaacgggatgggttgttctgcgaa
cgcatttttgggcctacgaaggactgggaatgccactgcggtaaatataaacgtatccgg
tataaaggtgtcgtctgcgatcgctgcggcgtcgaagtcacgcacgccaaagtccgtcgt
gaacggatgggccatattaaattggctacacctgtttctcatatttggtattttaaaggc
attcccagccggatgggcttgattctcgatatctcgccccgttcgctggaaaaagtctta
tactttgcttcgtacattgtcctcgatccgggcgatacgtctcttcagaagcagcagctg
atgacggaaacggaatatcgtcagtatctcgacttgtacggcgataaattccgtgtcggc
atgggtgccgccgcgattaaagagctcctccagggactcgacctcgaccagctcgataaa
gagctgcgcgatgaactccgcgactcttcgggccagcgccgcgtccgcgcgatccgccgc
ctggaagtcgtcgaagccttccgtcattccggcaataaaccggaatggatggtcatggac
gtcattccggtcattccgccagaattgcgccccatggtccagcttgacggcggccgtttt
gcaacgtctgacctgaacgacctctatcgccgggtcatcaaccgaaacaaccgcttgagc
cgcctccttgaattgggtgcgccggacatcatcgtccgcaatgaaaagcgcatgcttcag
gaagctgtcgatgccctcatcgacaatggccgccgcggccgccccgtaacgggccccggc
aatcgtccccttaaatctctttcggatatgctgaaagggaagcagggccgtttccgtcag
aacttgctcgggaaacgtgtcgactattccggccgttcggttatcgttgtcggcccggaa
atgaagatgcaccagtgcggtcttccaaaggaaatggcactggaactcttcaagcctttc
gtcatgaagaagctcgtcgaaaaagaaattgcgacgaacattaaaaacgccaagaaaaaa
gtcgaacgcgtcagcaatgaagtctgggacgtcctcgaagacgtcatcaaggaacatccg
gttctcttgaaccgtgccccgacactccaccgtttgggcatccaggcctttgaaccggtc
ctttgggaaggtcgggccattaagcttcatccgctggtctgcacggccttcaacgccgac
ttcgacggtgaccagatggcctgccatctgccgctgtcggtagaagcccagtccgaagct
cggacgctcatgttgtcgtcgcacaacatcctggctccgaaagacggcaagccggttgct
gttcctacacaggacatggttctcggtgcttactacctgaccttggttaaaccgtctgcg
aaaggcgaaggcaagatcttctccaattacgatgaagtcatgctggcttacgatgccaaa
gtcatcgacattgaagccttgatcaaagtccgcatcccgggccacggcctcattgaaacg
acggcaggcaaactcttgtacaactaccagatctacgaaccgctgcgcctcttccatacg
gataaggtcatggtcttcgataatcctcaggatgtcgtatttgcctatgaaaacggcgtt
atcgactggacgcacttcatcaaagtgaaagatgccgacggtcatatcctggactatggt
ttctcccagttgaaagaagcttttggtgtcgacctcatggccgttcgcccgcttccgaaa
cataaaatcgataaagatgctgtcgctgctttcaaagaaggtaaagaatatgtcgacgtc
gactgcctcggcgtcctcatgagcaagaaggaaatcggcaaactcgtcgatgcctgcttc
cacctctttggcaacaccaagacggcagaacttcttgataatattaaggctatcggctac
cactacgctcgtcaggcaggtatgtccatcgccatttccgacattcagattccggaagaa
aaatgggatatcctcggcgctgctgacaaacaggtacagaacgtatccaagatgtatcag
cgcggtctcattacggaagatgaacggtatcgtaaaacctgtgctatttgggaaaaagcg
accgatgacgttacggaagtcatgatggataacatggatcccttcaactcgatcttcatg
atggctgactccggtgcccgtggtaataaacagcagattcgccaggttgccggcatgcgt
ggcctgatggctgacccgtcggggcgtatcatcgacttgccgatcaaggcaaacttccgt
gaaggcctgtccgtactggactacttcacctcgtctcacggtgcccgtaaagggttggcg
gatacggctcttcgtacggctgactcgggttatctgacccgccgtctggtcgacgtctcc
caggatgtcatcgtccgcgaagacgactgcgacgtattcggcatcgatctcgtccgcgaa
cgggcccgcttggcaagctcctgccgccaggctgtcaaccttctgcgcgataagctcatc
ggccgcgtcttggctcgtgaagccgtggatccggaaacgggtgaagccgtatttgaagca
gaacacctcctgaccaacgatgacatggatacgatcattgaacatcaggttccgaaactc
tatctccgcggcagccagatggatatcaacgatgacctcaatcataccaacgtcatcgaa
acggtttccctcggcgcaccggaagaaggtttccgggcagctatccgcaaatccatggcg
gaaaacatgcttggcaagactatcgaagaagccgtcatcgactccaatggcattgaaatc
tgcgcgaagggaacgccccttacggaagatgccatcgatcgcatcctgaacagtgatgtc
aaagaagtcaaagcccgcaacaacgatatccgcggcgtagaagtcacggccatcgtcgaa
ggcaacggcgtcatcgaaccgctcgaagaacggatcgaaggccgtacggctgctgaaacc
ctggtcaacccggaaacgggtgccgtcatcgtagccctcaatgaggaaatcatggccgac
caggctaaagaaattgctaaatattacgataccgtccggatccgcagcgtccttacctgc
cacagccgttacggtgtctgcgctaagtgctatggccgcgacctcggtaccggcggcaag
gtcaatgtcggtgaatcggtcggcactattgcagctcagtccatcggggaaccgggtaca
cagctgacgatgcgtaccttccatacaggcggcgtcgcatcggccggcgatattacccag
ggtcttcctcgtgtcgaagaattgttcgaagctcgtaagccgaagggcaacgctatcgtc
acggaaatcagcggtaccgtatcgattacggaaaaagaagaccatcacgacatcaacatc
gttcacgtcctctcgaaagacggcgaagaacggagctacaccattcccttcggttcgcac
ctcgtcgtacatgaaggcgatgtcatcgaaaagggcagccgtattacggccggctctatc
aacccccacgatatcctgcgtatccagggcgtcgaagcaacacagcgctacttggtatac
gaagtacagaaggtatacaaatcacagggtgttggtatcaacgataagcacatcgaagtc
atcgttcgccagatgctgcgcaagatgaagattgaagaagccggagatgcagatgtattg
ccgggtgattatatcgacgtcaatatctttgaagatatgaacaagcgcattgccaacaac
ggcggcaagaccgctatcggcaaaccgatgctgctggggattaccaaggccgccctggca
acggattccttcctgtcggctgcttccttccaggaaacgactcgtgtcctgaccgatgcc
gctattaaaggtaaggtcgatccgctcttaggccttaaagaaaacgtcattatcggtaaa
ctcatcccggcagggaccggcatgagccgttaccgcaaagtaaaagtagtaaagaccgtc
ccctccatcagctatgaagatgaagacggaaatcccgtagatgcccctgaaagtgttgtt
gaagcaccggaagccggccactaa
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integrated database retrieval system
