Megasphaera massiliensis: LCQ47_11635
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Entry
LCQ47_11635 CDS
T07781
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
mmax
Megasphaera massiliensis
Pathway
mmax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCQ47_11635 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmax03400
]
LCQ47_11635 (uvrB)
DNA repair and recombination proteins [BR:
mmax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCQ47_11635 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCQ47_11635 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_5
HEM4
UB2H
AAA_25
AAA_7
DUF87
Motif
Other DBs
NCBI-ProteinID:
UBS54818
LinkDB
All DBs
Position
2491104..2493224
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AA seq
706 aa
AA seq
DB search
MSHYNKDYDTSHPFRVVAPYEPMGDQPEAIESLAEGIESGQWAQVLLGATGTGKTFTMAK
LIEKVQKPTLVIAHNKTLAAQLCSEFKAFFPDNEVGYFVSYYDFYQPEAYIASTDTYIEK
DASINDEIDKLRHSATMSLFERRDVIIVASVSCIYGLGDPEDYSELVVSLRLGQEKTQEE
ILRKLVDIQYNRNDMNLDRGTFRVHGDTIEVFPAAFDKSIIRIEMFGDEIDRLTEVDVLT
GEVIAERKHVAIYPASHYVTTKNKMERALGTISRELDERLKVLKDGEHLLEAQRLEQRTR
YDMEMMEEMGYCSGIENYSRHLAGRKAGQAPYTLLDYFPDDFMILVDESHVTLPQLRAMY
AGDRSRKESLIEYGFRLPSALDNRPLKFDEFVERINQIVYVSATPGPYEMDVETNMAQQI
IRPTGLLDPKVEVRPIEGQMDDLLGEIRKRTDKDERVLVTTLTKKMAEDLTDYLKEMGVR
VRYLHSDIATIERAEIIRDLRVGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSD
TSLIQTMGRAARNVEGTVIMYADKITDSMARAMDETQRRREIQDTYNKQHHITPKSVKKD
VVNLIELTKVAEDDAAYGGKKGGKGRAMTREALNKVIKTMTLQMKEASKRLEFERAAELR
DRLGQLRQQLADMSHDDTLPKEMGGEDMPSRRYRRKIKRPDAKKKR
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacaataaagattacgatacgtcccatcccttccgcgtcgtcgccccttat
gaaccgatgggggaccagccggaagccattgaatccctggccgaaggcatcgagtccggc
caatgggcccaggtcctcctcggtgcgacggggaccggcaagacctttaccatggccaag
ctcatcgaaaaggtccagaaaccgaccttggtcatcgcccacaacaagaccctggcagcc
cagctgtgcagcgaattcaaggccttcttcccggataacgaagtcggctatttcgtcagt
tattacgatttttatcagcctgaagcctacatcgcttcgaccgatacgtatatcgaaaag
gatgcgtccatcaacgatgaaatcgataaactgcgccactcggcgacgatgagcctcttt
gaacggcgggacgtcatcatcgtcgcttccgtgtcctgcatctacggcctcggtgaccct
gaagactacagcgaactcgtcgtctctctgcgcctgggacaggaaaagacgcaggaagaa
atcttgaggaagctggtcgacatccagtacaaccgcaacgacatgaacctcgaccgcggg
accttccgcgtccacggcgacacgatcgaagtctttccggcggccttcgacaagtccatc
atccgcatcgaaatgttcggcgatgaaatcgaccgcctgaccgaagtcgacgtcctgacc
ggcgaagtcattgccgagcgcaagcacgtcgccatttacccggccagccattacgtcacg
accaagaacaagatggaacgggccttgggcaccattagccgggaattggacgaacgattg
aaagtactcaaagacggggaacacctcttggaagcccagcgcctggaacagcggacgcgg
tacgacatggaaatgatggaagaaatgggctactgctcgggcatcgaaaactattcccgc
cacttggccggccgtaaagccggacaggcgccgtacaccctcctcgattatttccctgac
gacttcatgattctcgtcgacgaatcccacgtcaccctgcctcagctgcgggccatgtat
gccggcgaccggtcgcggaaggaaagcctcatcgaatacggcttccgcctgccgtcggcc
ctcgacaaccggccgctgaagttcgatgaatttgtcgaacgcatcaatcagatcgtctac
gtcagcgccacgcccgggccgtatgaaatggatgtcgaaacgaatatggcccagcagatc
atccggcccacaggcctcctcgatcccaaggtcgaagtccgtcccatcgaaggccagatg
gatgacctcttaggggaaatccgcaagcggaccgacaaggacgaacgagtcctggtcacg
actttgaccaagaagatggccgaagatttgacggattatctgaaggaaatgggcgtccgc
gtccgctacctccattcggatattgctaccatcgagcgggctgaaatcatccgcgacctg
cgggtcggcgaattcgacgtcctggtcggcatcaacctcttgcgcgaaggcctggacatg
ccggaagtctctctggtggccatcctcgatgccgataaagaaggcttcctccgttccgat
acgtccctcatccagaccatgggccgggcggcgcgaaacgtcgaagggacggtcatcatg
tatgccgataagattaccgattccatggcccgcgctatggacgaaacccagcgccgccgg
gaaattcaggatacctataataaacagcaccatattacgccgaagtcggtcaaaaaagac
gtggtcaacctcattgaactgaccaaggtcgccgaagacgatgcggcctacggcggcaag
aagggcggcaaaggacgggccatgacccgggaagccctgaacaaggtcattaagaccatg
accctgcaaatgaaggaagcgtcgaagcggctggaatttgaaagggctgccgaactgcgc
gaccgcttagggcagctgcgccaacagttggccgacatgagccacgacgacaccctgccg
aaagaaatgggcggggaagacatgcccagccgccgctaccggcgaaagatcaagcggccc
gatgccaagaagaagcgctag
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