Methanosarcina mazei Tuc01: MmTuc01_0769
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Entry
MmTuc01_0769 CDS
T02477
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmaz
Methanosarcina mazei Tuc01
Pathway
mmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MmTuc01_0769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaz03019
]
MmTuc01_0769
03009 Ribosome biogenesis [BR:
mmaz03009
]
MmTuc01_0769
Enzymes [BR:
mmaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MmTuc01_0769
Messenger RNA biogenesis [BR:
mmaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MmTuc01_0769
Ribosome biogenesis [BR:
mmaz03009
]
Prokaryotic type
rRNA helicases
MmTuc01_0769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGF96177
UniProt:
M1P6Y5
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All DBs
Position
742064..743896
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AA seq
610 aa
AA seq
DB search
MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRV
LKSGVDIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNK
RMLFFSATMPKAILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAA
TDVAARGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGHIPEIKDVIKAKRARVRTELEETIKTEEYGDCLEMSQKLLEEYPAEKILA
ALWKFTFKDKFDESMYTEISSGSSYVDRKGKSRLFIAMGKADGMTPDKLSYFIQEELGDG
ELKVRDAEIFPHFSFVTLPFAQAETLIEIFKNKRRGSKPFVELAQKSRGRSSKDSGETRS
DNRGTSRGNSRNGESRGDSRGESRGTKSTNYSRSTRSTRSTKKSLLFPFSFSQFVLLSRF
PVSFFKVSRF
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattgaaagccctc
aaaaagaaaggtttcgaagaaccaaccccgattcaggaaaaagtcattccgctttttttg
aaaggagaagcagacattatagggcaggcccagacaggaacaggaaaaacgacagccttc
ggagcccccatcatagagaaaattcctgagaaatcaggacacgttcaggcaataatcctg
acccctacaagggaactcgcaattcaggtttcagaagaacttaactccataaaaggagac
aagaaactatacattgtccctatatatggaggacagtccatgacccagcagcttcgcgtg
ctgaagagcggcgtggacattgttgtaggaactcctggaagggtcatcgaccacctcgaa
agaaagagcctcaacctcgaacatatcgcatatttcgttcttgacgaagccgatgaaatg
ctgaacatgggctttattgacgacataaaagagatcttaaaatcaaccggcccgaataag
aggatgcttttcttttcagccacaatgccaaaggcaattcttggaatcgtcaagaagcat
atgcagaactatgagcacattacaatcgaaaaagaggaacttacagaaaccctgaccgaa
cagatctattttgaggtcaaggaaagcgacaagttcgaagctctctgcaggattatcgac
attgaagacgaattctacgggctcgtgttctgccggacaaaaactgacacaagccagctt
gcccagaaactcagcgacaggggttatttagccgatgccctgcacggagacctttcccag
caggagagagaaaagatccttaacaagttcaggaagcagaagataaacatccttgcagca
accgacgtcgccgcaagaggcatcgacattatggacctgacccacgtcatcaactatgcc
ctgccccaggacccggagtcctatgtgcacaggataggaaggacaggaagggcaggcaag
cagggaactgccattacttttgtcacatccacggaattcagaaggcttacttacattaaa
aagacttcaaagtccgaaatgaagaaaggccacattcccgaaataaaagatgtaattaaa
gccaaaagggccagagtaagaacagaactcgaagagaccataaagacggaagagtacggg
gactgccttgagatgagccagaagctccttgaagaataccctgcagaaaaaattctggct
gccctttggaagttcaccttcaaagacaagttcgatgaaagcatgtacactgaaatctcc
agcggcagctcctatgtcgacaggaaaggcaaatccaggctcttcatagctatgggtaaa
gcagacggcatgactccggacaaattgtcgtatttcattcaggaagaactcggggacggc
gaactcaaagtaagggatgcagaaattttcccgcatttctcctttgtaactctgccattt
gctcaggctgaaaccctgatcgaaatattcaaaaacaaaaggagaggaagcaaacccttc
gtggaactcgcccagaaatccaggggaagaagctcaaaggattcaggggagaccagaagc
gataatcgaggcacttctagaggcaattccagaaacggtgaatccagaggggattctaga
ggcgaatctcgcggcacaaaaagcacaaattactcaagaagtaccagaagtacaagaagc
acgaaaaagtcgcttctttttcccttttctttttctcaattcgttcttttatcccgtttt
cctgtttcttttttcaaagtttcaaggttttaa
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