Methanosarcina mazei Tuc01: MmTuc01_1347
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Entry
MmTuc01_1347 CDS
T02477
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mmaz
Methanosarcina mazei Tuc01
Pathway
mmaz03030
DNA replication
mmaz03420
Nucleotide excision repair
mmaz03430
Mismatch repair
mmaz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MmTuc01_1347
03420 Nucleotide excision repair
MmTuc01_1347
03430 Mismatch repair
MmTuc01_1347
03440 Homologous recombination
MmTuc01_1347
03460 Fanconi anemia pathway
MmTuc01_1347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmaz03000
]
MmTuc01_1347
03032 DNA replication proteins [BR:
mmaz03032
]
MmTuc01_1347
03400 DNA repair and recombination proteins [BR:
mmaz03400
]
MmTuc01_1347
Transcription factors [BR:
mmaz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MmTuc01_1347
DNA replication proteins [BR:
mmaz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MmTuc01_1347
DNA repair and recombination proteins [BR:
mmaz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MmTuc01_1347
MMR (mismatch excision repair)
MmTuc01_1347
DSBR (double strand breaks repair)
HR (homologous recombination)
MmTuc01_1347
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
OB_Ssb-like
REPA_OB_2
RecG_wedge
POT1PC
TriTu
Motif
Other DBs
NCBI-ProteinID:
AGF96727
LinkDB
All DBs
Position
1323109..1324563
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIETIYKKLSHVISKEDFLQRIQEKVENMGGLCDETMAAMLVANELGFSDAGRDSIKI
ENITPESGPVNFIARIISVFDTKEFTRNDGTIGRVGNLIVGDETGKVKLTLWDNMADLIK
MGKIKAGQSVQVSGFAKQGYSGVEVNIGNNGVLTESEEEIDVVSNSYKIKDIKDGMGDIN
LNGKVLEVSEIRTFQRKDGNSGRVGNLMLGDETGTLRVTLWDDKTDFLSQVEYGDSIELI
NAYARENAFSQKVELQVGNRSIIRKSEKKIEYEEEFTPIDDIKADMNNINISGRILDISE
VRRKREKDGSTGRVGNVLLGDSTGKIRLTLWDEKTDILEEIDFDETVEVLNAYSRENTFS
QQVELNLGARGIIQRSEKKVEYREKFTDIADIIPGESYSVQGKVAEIGELREFEKEDGTE
NVVANLQLKDDTGSIRLTLWGEQAYVIEDLDIDSEIQIIDAYARYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattgaaactatttataagaagctcagccacgtcataagtaaagaggatttc
ctgcagcgcatacaggaaaaagtagagaatatgggagggctctgtgatgagacaatggct
gccatgctggtagccaatgagctgggattctcggatgcaggcagagatagcataaagata
gaaaacattacccccgaaagcggacctgttaactttattgcaagaattatttctgttttc
gataccaaagaattcacaaggaatgacgggactataggaagggtaggaaaccttattgtt
ggggatgagaccggaaaagtaaagttaaccctgtgggacaatatggcagaccttattaaa
atgggaaaaataaaggcagggcaatccgttcaggtcagtggattcgcaaagcagggatat
tccggagtggaagttaatattggtaacaatggagtcctgacagaaagtgaggaagagatc
gatgttgtttcaaatagttataaaataaaggatataaaggatggcatgggagacatcaac
cttaacggaaaggtactggaagtctccgagatcaggacattccagagaaaagacgggaac
agcgggagggtaggaaacctgatgctgggagacgaaacaggtacgctcagggtaacactc
tgggatgacaaaactgattttttaagccaggttgaatatggggatagtatagagctgatt
aatgcttatgcccgcgaaaatgcctttagccagaaagtagagttgcaggtaggaaacagg
agtataatcaggaaaagtgaaaagaaaattgaatacgaagaagaatttactcctattgat
gatataaaagctgatatgaataatataaatatctcaggaaggatccttgatatctcggaa
gtcaggagaaagagagaaaaagatggatccactgggagagtaggaaatgtccttctgggc
gattctacaggcaaaataagactgacgctatgggatgaaaaaactgatattcttgaagaa
attgactttgatgaaacagttgaagtccttaacgcttattcgcgggaaaatactttcagc
cagcaggttgaactcaacctgggagccagaggaataattcagagaagcgaaaagaaggtc
gaatacagggaaaaatttaccgatatagccgatatcatccccggagaaagttattctgta
cagggaaaagttgccgagattggagagctcagagaatttgaaaaagaagacggaaccgaa
aatgttgttgcaaatctccagcttaaagacgatacaggcagcatccgactgacactctgg
ggagaacaggcatatgtgatagaagaccttgacatagattccgaaatccagatcatcgat
gcttatgccaggtacgggctgaacgaagaaatagaactgagtgttggaaacaggagtaga
gtgattatcctctga
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