KEGG   Methanosarcina mazei Tuc01: MmTuc01_1954
Entry
MmTuc01_1954      CDS       T02477                                 
Name
(GenBank) RNA-binding protein, containing S1 domain
  KO
K07573  exosome complex component CSL4
Organism
mmaz  Methanosarcina mazei Tuc01
Pathway
mmaz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmaz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MmTuc01_1954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmaz03019]
    MmTuc01_1954
Messenger RNA biogenesis [BR:mmaz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MmTuc01_1954
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MmTuc01_1954
SSDB
Motif
Pfam: ECR1_N EXOSC1 ECR1_N_2 HypA S1_RRP5 OB_RRP5_4th zf-C3HC4_3
Other DBs
NCBI-ProteinID: AGF97289
UniProt: M1QJY3
LinkDB
Position
1935014..1935964
AA seq 316 aa
MIRIRKNKTTRKKLTGPGEGKNGAEKSAPSNEESRDQFKGQQKDQPRTQFKSQPREQSRD
QFKGQPRAQYKSQPRDQSRGQFRDQSRDQFKGSPDKKRKFPYSKKGPRDRKETPGFRPPT
AEAVVSEEDLEKGGFVLPGELVGTTEEFKSGNGTAVIAGDIYSTATGNVLIDRKARVVSV
KPNTITPNILKVGDVVYGRISDVRESGAMVEVAGIEGKENREIVSVRTGDIHVSSVRDSY
VKRLADEFRPSDIVRAKVVDVERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCN
MTETRKISTEYGKGIR
NT seq 951 nt   +upstreamnt  +downstreamnt
atgattagaattcgaaaaaataagactaccaggaaaaaattaacaggtcctggtgaagga
aagaacggagctgagaaatcggctccttcaaatgaagaaagcagggatcaatttaagggt
cagcaaaaggatcagcccaggactcaatttaaaagccagcccagggagcagtcaagagac
cagtttaaaggtcagccccgagctcagtataagtctcagcccagagaccagtccagaggg
caattcagagaccagtcaagggaccagttcaaaggcagccctgataaaaagagaaaattc
ccatattccaagaaaggtcccagagatagaaaggaaactccgggtttcaggccccctacc
gcagaagccgttgtatctgaagaagatctcgaaaaaggaggctttgtacttcctggagaa
cttgtcggaactacagaagagttcaaatcgggcaatggaactgcagtaattgcaggagac
atctattccactgctacgggtaatgtgctcattgacagaaaagccagagtggtctcggta
aagccaaacacaattactccaaatatcctcaaagtaggagatgtcgtgtacgggcggata
tctgacgtccgtgagtccggggcaatggtggaagtcgcaggaattgaagggaaagaaaac
agggaaatcgttagtgtaaggaccggagatattcatgtctccagtgtgagagattcctat
gtgaagaggctggcagatgagttcaggccttctgacatagtaagagcaaaggtagttgac
gttgaaagaatgcgccttactacagctgaagattctcttggagttgtaaaagcttactgt
tcaaactgcaaaggagaacttgtgctggaagggaaaaagcttaaatgcccggtctgcaat
atgactgaaacccgcaagatctcaactgagtatgggaaagggatcaggtaa

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