Methanosarcina mazei Tuc01: MmTuc01_2681
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Entry
MmTuc01_2681 CDS
T02477
Name
(GenBank) Exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mmaz
Methanosarcina mazei Tuc01
Pathway
mmaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MmTuc01_2681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaz03019
]
MmTuc01_2681
Messenger RNA biogenesis [BR:
mmaz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MmTuc01_2681
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MmTuc01_2681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGF97971
UniProt:
M1Q077
LinkDB
All DBs
Position
2650603..2651346
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AA seq
247 aa
AA seq
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MDKKIVIPGDLLSDDVKKSGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSMND
VVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRDVDSS
MKIELALRDPNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDIELLSKALRKIEAEAQRSGLTDRIYNFLKNEKNEKTDVSVAKEDHSEDIYRKID
VLLDPKN
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgatgatgtaaaaaaatccgga
tacgggacgtatgtcaagaacgacaaaatctattcttcgctttgcggcattgaaagcctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcgatgaacgat
gtggtgataggggtcgttattgtggttactccatccaactggatactggatattgcagct
ccttatgacggtttgcttcatgtgtccgagtatccgagacgagtcgaatcccgggaaatg
cctgaaattctggacgtaggcgactctgttattctcagggtgagagatgtggacagctcc
atgaaaatcgagcttgccctgagagacccgaaccttcataaacttaggacaggccagatt
gttgaggttgagcctgtgaaagttccccgtgtaataggacacggcggttccatgatctca
atgctgaagaaagagacaaactgcagcattttcgtaggtcagaacggcaggatatggatt
gatgggaaggacgaggatatagagcttttgagcaaggctctccggaaaatcgaagctgaa
gcccagcgttccgggttgacagaccggatctacaattttttgaaaaatgaaaaaaatgaa
aagacggatgtgagtgtggcaaaggaagatcattccgaggatatataccggaagatcgat
gtactgctggaccccaagaattga
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