Methanosarcina mazei Tuc01: MmTuc01_3386
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Entry
MmTuc01_3386 CDS
T02477
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mmaz
Methanosarcina mazei Tuc01
Pathway
mmaz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MmTuc01_3386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmaz03400
]
MmTuc01_3386
DNA repair and recombination proteins [BR:
mmaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MmTuc01_3386
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MmTuc01_3386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
P-loop_SecA
AAA_16
AAA_30
DUF87
Flavi_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGF98637
UniProt:
M1PDK2
LinkDB
All DBs
Position
complement(3349055..3351067)
Genome browser
AA seq
670 aa
AA seq
DB search
MKVSSQTTGELAENKFETIYDERYWESPPFKLVSDFEPKGSQPEAIEKLVDGLKKGEPFQ
TLLGVTGSGKTYTVANVINQIRKPTLVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPAKDQYIEKDAMINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDKVHRKEILEKLIDIQFERNDLELMPGRFRVKGDTIDIIPGYFDDIIRIEL
FGDEVDRISEVNKQTGQRKEDMDYFFVYPARHYVIPEEEQKSAIQSILEELEERLPELGL
LESHRLKQRTLYDMEMIQETGSCKGIENYSRHFDHRRPGEKPFCLLDYFPDDFLLVIDES
HQTIPQLHGMYNGDRSRKKSLIDYGFRLPSAFDNRPLKFEEFEKYMKNVIFVSATPADYE
RDHSSRIVEQIIRPTGLVDPEVEVRPLEGQVRDVMQEIRKIVERGDRALVTTLTKKLAEE
LTEFLAKNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRNSKSLIQIIGRAARNSNSSVVLYADNMTDSIKTAVQETERRRSMQIDYNKE
HGIVPTTIRKPIREKVVDITDTKHIPKTDIPNVIIELDAEMREAADRLDFERAIQVRELI
KNLEKEVKAV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttccagccagacaaccggggagttagctgaaaataagtttgaaacaatatac
gatgaacggtactgggaaagccctccttttaaacttgtttccgattttgaacccaaaggt
tcccagcctgaagcaatagaaaaacttgtggacggactgaagaaaggagagccgttccag
acccttctcggggtgacagggtcaggtaagacctatacggttgcaaatgttataaaccag
atccgaaaaccgactctcgttattgcccacaataaaaccctggctgcccagttatataat
gagttcagggaattcttcccagaaaaccgtgttgaatattttgtctcatattacgactat
taccagccagagtcctatctcccagcaaaagaccagtatattgaaaaagatgcaatgata
aacccgaaaatcgaacagatgcgccttgcagccacagcttccctgatgtccaggcaggac
gtgattgtggtggcttccgtgtcctgcatctatggtctgggaaaccctgaaaacttccag
aagatgggttttgaacttaaagttggggataaggttcacagaaaggaaatccttgagaaa
ctgatcgacatccagtttgagagaaacgaccttgaactcatgccagggcgcttcagagta
aaaggagatacaattgatatcattcccggttactttgatgacataatcaggatagaactt
ttcggggacgaggtggaccggatttctgaagtgaacaagcagaccgggcagagaaaagag
gatatggactatttcttcgtctatcctgccaggcactatgttatccctgaagaggaacag
aaaagcgcaatccaatctatccttgaagaacttgaagagcgcctgccagaactcgggctg
cttgagtcccacaggttaaagcagcgcacgctctatgatatggaaatgatccaggaaacc
ggcagctgtaaaggaattgaaaactattcaaggcattttgaccacaggcggcccggagag
aagcctttctgcctgcttgactatttccctgatgacttccttctggttattgatgagagc
caccagacgattccgcagctgcatgggatgtataatggggacaggtcaaggaaaaagagc
cttatagattatggtttcaggcttccaagtgcttttgataacagacctctgaagtttgag
gaatttgaaaaatacatgaaaaatgtgattttcgtctcggcaacccctgctgattatgaa
cgtgaccactcttcccggattgtggaacagatcatccgccctacaggccttgttgaccct
gaggttgaagtgcgtcctttagaaggccaggtcagggatgttatgcaggagatcaggaaa
atagtggagaggggagaccgcgcccttgtgaccacgcttaccaaaaagctagcagaagaa
ctgactgaattcctggcgaaaaatgagatcaaggcacgctacctgcactcggatataaag
accattgaaaggacggaaattatccgcgaactgcgcctcggcaagtttgatgtgcttgtt
ggcatcaaccttctcagggaaggacttgatattcctgaagtcggcttcattggaatcctc
gatgcagataaagaagggttcctcaggaattcaaagagcctcatccagataataggacgc
gcagcaagaaactccaattcaagtgttgttctctatgctgacaatatgacagattccatc
aaaacagcggtgcaggaaaccgagcgccgccgttcaatgcaaatagattacaacaaagaa
cacggcattgtcccgacaaccatcagaaaaccaattagagaaaaagtcgtggatattacg
gatacaaaacatattccgaaaaccgatattccaaacgtgatcatcgaactggatgcagag
atgagggaagctgctgacaggctggacttcgagcgtgcaatccaggtcagggaacttata
aagaatctggaaaaagaagtgaaagctgtgtaa
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