KEGG   Mycobacterium sp. MCS: Mmcs_3967
Entry
Mmcs_3967         CDS       T00367                                 
Name
(GenBank) ATP-dependent RNA helicase CsdA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
mmc  Mycobacterium sp. MCS
Pathway
mmc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mmcs_3967
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmc03019]
    Mmcs_3967
   03009 Ribosome biogenesis [BR:mmc03009]
    Mmcs_3967
Enzymes [BR:mmc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Mmcs_3967
Messenger RNA biogenesis [BR:mmc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mmcs_3967
Ribosome biogenesis [BR:mmc03009]
 Prokaryotic type
  rRNA helicases
   Mmcs_3967
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 UvrA_inter
Other DBs
NCBI-ProteinID: ABG10072
UniProt: A0A5Q5BNP4
LinkDB
Position
complement(4227055..4228728)
AA seq 557 aa
MTSPEPDAPGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSS
YGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERIL
SDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMD
ALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDG
SIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERDN
NVPLADIAAALAVQSRNGEEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDLATYRIAV
GKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKDTLKKLERTRIQGV
LINLEPDRGPKARYKGK
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgacgtcgcctgagccggacgcccccggtaccgaaaccaccttcgctgatctgcagatt
cacccggaggtgttgcgggccgtcaccgacgtcggctatgagacgccgtcggcgatccag
gccgcgaccatcccggcgatgctcgccggctccgacgtcgtcgggctcgcccagaccggc
accggcaagaccgcggccttcgccatcccgatcctgtcgaagatcgaccccaacagccgc
gccacccaggccctggtcctcgcgccgacacgtgagctcgcgctgcaggtcgccgaggcg
ttcggccgctacggcgcgcatctgccggtcaacgtgctgccggtgtacggcggctcgtcc
tacggaccgcagatggccgggctgaaacggggcgcgcaggtcgtcgtcgggaccccgggc
cgggtgatcgaccacttggagaagggcagcctcgacctgtcgcacctggactacatggtg
ctcgacgaggccgacgagatgctgcagatgggtttcgccgaggacgtcgaacggattctg
tccgacacccccgagtacaagcaggtggcgctgttctccgcgaccatgccgccgggaatc
aagaagatcaccaagaagtacctgcacgatccggtcgaggtcacggtcaagtccaagacg
cagaccgccgagaacatcacgcagcgctacatccaggtgtcgtacccgcgcaagatggac
gcactgacccggctgctggagacggagcagggcgacgggatgatcgtgttcgtccgcacc
aaacaggccaccgaggaggtggccgagaagctgcgggcgcgcgggttcgcggcggcggcg
atcaacggcgacatcccgcaggcggtgcgtgaacgcaccatctcgcaactcaaggacggt
tcgatcgacatcctcgtcgcgaccgacgtcgccgcccgtggtctggacgtcgagcggatc
tcgcacgtggtgaacttcgacatcccgcacgacccggagtcctacgtgcaccgcatcggg
cgcaccgggcgcgcaggccgctcgggcaccgcgctgctgttcgtcaccccgcgcgaacgg
cacctgctgaactcgatcgagcgggtcacccggcagaagctcgtcgagatccagttgccg
tcggtcgaggacgtcaacgcccagcgcgttgagaagttccgcgactcgatcggtgaggcc
ctcaacgctccgggcatcgacctcttccgccgcctcatcgaggactacgaacgcgacaac
aacgtgccgctggccgacatcgccgcggcgctcgccgtgcagtcccgcaacggcgaggag
ttcctgatgaccgaaccgccgccggagaagcggcgggagcggcccgtccgggatgagagc
ggcccacgcaaggcgcgcgaccgcacgcggtcggacctcgcgacctaccgcatcgcggtg
ggcaagcggcacaaggtgatgcccggtgcgatcgtcggcgcgatcgccaacgagggcggc
ctgaaccgcagcgacttcggtcatatcgcgatcaagccggagtactcgctggtggagctg
cctgccgacctgccgaaggacaccctcaagaagctcgagcgcacacgcatccagggtgtg
ctgatcaatctcgagcccgatcgcgggccgaaggcgcgctacaagggcaagtga

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