Entry |
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Name |
(GenBank) ATP-dependent RNA helicase CsdA
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KO |
|
Organism |
mmc Mycobacterium sp. MCS
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:mmc00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mmcs_3967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:mmc03019]
Mmcs_3967
03009 Ribosome biogenesis [BR:mmc03009]
Mmcs_3967
Enzymes [BR:mmc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mmcs_3967
Messenger RNA biogenesis [BR:mmc03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mmcs_3967
Ribosome biogenesis [BR:mmc03009]
Prokaryotic type
rRNA helicases
Mmcs_3967
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(4227055..4228728)
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AA seq |
557 aa
MTSPEPDAPGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSS
YGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERIL
SDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMD
ALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDG
SIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERDN
NVPLADIAAALAVQSRNGEEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDLATYRIAV
GKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKDTLKKLERTRIQGV
LINLEPDRGPKARYKGK |
NT seq |
1674 nt +upstreamnt +downstreamnt
atgacgtcgcctgagccggacgcccccggtaccgaaaccaccttcgctgatctgcagatt
cacccggaggtgttgcgggccgtcaccgacgtcggctatgagacgccgtcggcgatccag
gccgcgaccatcccggcgatgctcgccggctccgacgtcgtcgggctcgcccagaccggc
accggcaagaccgcggccttcgccatcccgatcctgtcgaagatcgaccccaacagccgc
gccacccaggccctggtcctcgcgccgacacgtgagctcgcgctgcaggtcgccgaggcg
ttcggccgctacggcgcgcatctgccggtcaacgtgctgccggtgtacggcggctcgtcc
tacggaccgcagatggccgggctgaaacggggcgcgcaggtcgtcgtcgggaccccgggc
cgggtgatcgaccacttggagaagggcagcctcgacctgtcgcacctggactacatggtg
ctcgacgaggccgacgagatgctgcagatgggtttcgccgaggacgtcgaacggattctg
tccgacacccccgagtacaagcaggtggcgctgttctccgcgaccatgccgccgggaatc
aagaagatcaccaagaagtacctgcacgatccggtcgaggtcacggtcaagtccaagacg
cagaccgccgagaacatcacgcagcgctacatccaggtgtcgtacccgcgcaagatggac
gcactgacccggctgctggagacggagcagggcgacgggatgatcgtgttcgtccgcacc
aaacaggccaccgaggaggtggccgagaagctgcgggcgcgcgggttcgcggcggcggcg
atcaacggcgacatcccgcaggcggtgcgtgaacgcaccatctcgcaactcaaggacggt
tcgatcgacatcctcgtcgcgaccgacgtcgccgcccgtggtctggacgtcgagcggatc
tcgcacgtggtgaacttcgacatcccgcacgacccggagtcctacgtgcaccgcatcggg
cgcaccgggcgcgcaggccgctcgggcaccgcgctgctgttcgtcaccccgcgcgaacgg
cacctgctgaactcgatcgagcgggtcacccggcagaagctcgtcgagatccagttgccg
tcggtcgaggacgtcaacgcccagcgcgttgagaagttccgcgactcgatcggtgaggcc
ctcaacgctccgggcatcgacctcttccgccgcctcatcgaggactacgaacgcgacaac
aacgtgccgctggccgacatcgccgcggcgctcgccgtgcagtcccgcaacggcgaggag
ttcctgatgaccgaaccgccgccggagaagcggcgggagcggcccgtccgggatgagagc
ggcccacgcaaggcgcgcgaccgcacgcggtcggacctcgcgacctaccgcatcgcggtg
ggcaagcggcacaaggtgatgcccggtgcgatcgtcggcgcgatcgccaacgagggcggc
ctgaaccgcagcgacttcggtcatatcgcgatcaagccggagtactcgctggtggagctg
cctgccgacctgccgaaggacaccctcaagaagctcgagcgcacacgcatccagggtgtg
ctgatcaatctcgagcccgatcgcgggccgaaggcgcgctacaagggcaagtga |