Mycobacterium sp. MCS: Mmcs_4352
Help
Entry
Mmcs_4352 CDS
T00367
Name
(GenBank) ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmc
Mycobacterium sp. MCS
Pathway
mmc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mmcs_4352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmc03400
]
Mmcs_4352
Enzymes [BR:
mmc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mmcs_4352
DNA repair and recombination proteins [BR:
mmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mmcs_4352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABG10457
UniProt:
A0A5Q5BQE2
LinkDB
All DBs
Position
complement(4630552..4632828)
Genome browser
AA seq
758 aa
AA seq
DB search
MVDHFGRVRLTNPDKVLYPATGTTKAEVFEYYVDVAEAMVPHIAGRAVTRKRWPNGVGEL
EFFEKQLASSAPDWLARGTIVHKSGTTTYPIIDTREGLAWIAQQAALEVHVPQWRFVGSG
GDLTPGPATRIVFDLDPGEGVTFRQLCEVAHEVRDLITDIGLTAYPLTSGSKGLHLYVPL
KEPISSQGASVLAKRVAQQLEKAMPKQVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSL
RGREHPTVAAPRTWEEIEDPDLRHLRFDEVLERIEEFGDLLADLDEYVPVEDRLTKYRSM
RDPSRTPEPVPPLPPKAGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDRPSE
NHLAVHTEDHPMEYLTFHGTIPKGEYGGGDMIVWDTGTYETEKFNDHAPDGPAKGGEVII
TLHGNRIDGRYALIQTDGKNWLAHRMKDQGNPTFEDFAPMLATHGSVEKFTAKQWAFEGK
WDGYRLLVDADHGKLCLKSRSGRDVTAEYPQLRALAADLADHHVVLDGEVVALDDKGVPS
FGHMQNRARSTRVEFWAFDILRLDGRWLLKAKYRDRRKLLETLASGGGLIVQPLLDGDGL
EALEDARKRRWEGVVAKKWDSTYQPGRRSSAWIKDKLWNTQEVVIGGWREGNGGRSSGIG
ALVLGIPGPDGLQFVGRVGTGFTEKELGSLKKTLAPLHTYESPFATRLPTQDAKGVTFVR
PELVGEVRYSERTGDGRLRQPSWRGLRPDKTPDDVVWE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcacttcggtcgggtgcgcctgaccaacccggacaaggtgctgtacccggcg
acgggcaccaccaaggccgaggtgttcgagtactacgtcgacgtggccgaggcgatggtg
ccgcacatcgccggccgggcggtcacccgtaagcgctggcccaacggcgtcggcgagctg
gagttcttcgagaagcagctggccagctccgcacccgactggctcgcgcgcggcacgatc
gtgcacaaatccggcaccaccacctacccgatcatcgacacccgcgaaggtctggcgtgg
atcgcgcagcaggccgcgctggaggtgcacgtgccgcagtggcggttcgtcggatcgggt
ggcgacttgactcccggcccggccacccgcatcgtgttcgacctcgaccccggcgagggc
gtcacgttccgtcagctgtgcgaggtcgcgcacgaggtccgcgacctgatcaccgacatc
gggctcacggcctatccgctgaccagcggcagcaagggcctgcacctctacgtcccgctc
aaggagccgatcagctcccagggcgcgtcggtgctcgctaaacgcgtcgcccaacagctc
gagaaggccatgcccaaacaggtcaccgccacgatgaccaagagcctgcgcgagggcaag
gtgttcctcgactggagccagaacaacggcaacaagaccacgatcgcgccgtactccctg
cgcggccgcgagcatccaacggttgcggcgccgcgcacctgggaggagatcgaggacccc
gacctgagacatctgcgattcgacgaagtgctcgagcggatcgaggagttcggggacctg
ctggccgatctcgacgagtacgtgcctgtcgaggaccggctcaccaagtaccgcagcatg
cgcgacccgtcgaggacgccggagcccgtgccgccgctaccgccgaaggccggcaacaac
gaccgcttcgtgatccaggaacaccatgcccggcggctgcactacgacctgcgtctggaa
cgcgacggtgtgctggtcagctgggcggtgccgaagaacctgcccgaccggccctcggag
aaccacctcgccgtgcacaccgaggaccatccgatggagtacctcaccttccacggcacc
atcccgaagggtgagtacggcggcggcgacatgatcgtctgggacaccggcacgtatgag
accgagaagttcaacgaccacgccccggacggacccgccaagggcggggaggtcatcatc
accctgcacggcaacaggatcgacggccgttacgcactgatccagaccgacggcaagaac
tggctcgcgcaccggatgaaggatcagggcaacccgacgttcgaggacttcgcgcctatg
ctggccacccacggctcggtcgagaagttcacggcgaaacagtgggcgttcgaaggcaag
tgggacggctaccggctgctggtcgacgccgaccatggcaagctgtgcctgaagtcccgc
agcggccgcgacgtcaccgcagaatatccccaattgcgcgcgctggcagcagatctcgcc
gaccaccatgtcgtgctcgacggggaggtcgtcgccctcgatgacaagggcgtgccgagc
ttcggccatatgcagaaccgggcccggtccacccgtgtcgagttctgggcgttcgacatc
ctgcgcctcgacggccgttggctgctgaaggcgaagtaccgagaccgccgaaagctgttg
gagacgttggccagtgggggcggactgatcgtgcaacccctactcgacggcgacggcctc
gaggctctcgaggacgcccgcaaacgcaggtgggagggtgtggtcgccaagaaatgggat
tccacctatcagccggggcggcgctcgtcggcgtggatcaaggacaaactgtggaacacc
caggaggtcgtgatcggcgggtggcgcgaaggcaacggcggccgcagcagcggcatcggc
gcactggtgctcggcatccccggacccgacggcctgcagttcgtcggccgagtcggcacc
gggttcaccgagaaggaactcggcagtctcaagaagacgttggcgccgctgcacacctac
gaatcccccttcgcgacaaggcttcccacccaggacgccaagggcgtgacgttcgtgcgg
cccgaactcgtcggcgaggtgcgttacagcgagcgtaccggcgacggccggttgcgccaa
ccgtcctggcgggggctgcgaccggacaagacgccggacgacgtcgtgtgggagtag
DBGET
integrated database retrieval system
