Marinomonas mediterranea: Marme_0231
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Entry
Marme_0231 CDS
T01449
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Marme_0231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mme03021
]
Marme_0231
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_0231
Enzymes [BR:
mme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Marme_0231
Transcription machinery [BR:
mme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Marme_0231
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Marme_0231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ADZ89535
UniProt:
F2JX16
LinkDB
All DBs
Position
238229..242329
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPPVLDVPYLLAIQLESYRKFLQEGKDLAEREELGLHGAFKSV
FPMVSFSGNAALEYVDYRLGKPVFDVKECQLRGVTYAAPLRVRVRLIIYDKESSNKAIKD
IREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLHSARV
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPVSILLRALGYKTEEILDTFFDTVRFYLSKDG
FEMDLVASRLRGETALFDIVDGNGEIIVEEGRRITAKHIRAMDKAGLERLSIPLEYILGK
VSAKNLVHPATGELIAEANTELSVDLLEALVGSGIKEIDVLYTNDLDHGPFISDTLRIDP
TNNQLEALVEIYRMMRPGEPPTKESAEGLFQGLFFAEERYDLSSVGRMKFNRRLGRDEDK
GPGILDNEDIIAVLKTLLDIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAEADGLMPQDLLNAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSTYARTNSYGFLETPYRKVV
DGKMTDETVYVSAIDEAKYVIAQASVNVDEEGRLVDELVQVRHMHETTLLAKEKVNLMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKADKPVVGTGMERNVAKDSGVC
IVARRGGVIESVDASRIVVRVNSEETLAGEAGVDIYNLTKYVRSNQNTCINQRTLVMKGE
KVASGDIMADGPSVDMGDLALGQNMRIAFMPWNGFNFEDSILVSERVVEEDRFTSIHIQE
LTCVARDTKLGPEEITADIPNVGEGALSKLDSSGVVYIGAEVEPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSQRVKTGTRGTVIDVQVFTRDGIEKDERAKSIEKSQLDQ
VRKDLNEEFRIVEKATFERLAEALVGQQAEGGPGLARNAIITEDYLANLDHPEWFKIRVA
SEDASEQLEKAQAALIERRKELDAKFEDKKRKLQTGDDLAPGVLKIVKVYVAIKRRIQPG
DKMAGRHGNKGVISKIMPVEDMPYDENGDPVDIVLNPLGVPSRMNVGQVLETHLGAAAKG
LGRKINEMIQIEREKAETVQELRSFLGEVYNGHEDGLRSARVEDLDSFTDDEILTLASNL
KGGVPMASGAFDGAKEAEIKRMLRLAGLNESGQIKLFNGRTGDAFERPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELENE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgtaaggatttcggtaaactgccgccc
gttttggatgtgccatacttgctggcaattcagcttgaatcctaccgtaaattcctgcaa
gagggtaaagaccttgcagagcgtgaggaattaggtctacatggggcctttaaatctgtc
tttccaatggtcagcttttccggcaatgcggctctagagtacgtcgattaccgattaggc
aaacctgtttttgatgtaaaagagtgtcaactgcgtggcgtgacctacgcggctccttta
cgcgttcgtgtaagacttatcatttatgataaagaatcttcgaacaaggcaattaaagac
atccgtgagcaagaagtatacatgggcgaaattccgctcatgacagaaaacggtaccttt
gttatcaatggtacagagcgtgtaattgtatctcagttgcatcgttctcctggtgtgttc
ttcgaccacgaccgtggtaagactcactcttcaggtaagttactgcattctgctcgtgtt
attccttaccgtggttcatggttggacttcgagttcgatcctaaagactgcgtgttcgtt
cgtatcgaccgccgtcgtaagttacctgtttctattttgctacgtgcattaggctacaaa
acagaagaaatcctagatactttcttcgataccgttcgtttctacctaagtaaagatggg
tttgagatggatttggttgctagccgtcttcgtggtgaaactgcactgtttgatattgtt
gatggtaacggcgagatcatcgtagaagaaggtcgtcgtattactgcgaaacatattcgt
gctatggataaagcgggtctagaacgtctttctattccactagaatatatcctaggcaaa
gtatctgcgaaaaaccttgtgcatcctgcgacaggtgagttgattgcagaggcgaataca
gagctatctgttgatttgttagaagcgttggtgggttcaggcattaaagaaattgatgtg
ctgtacacgaacgatttggatcacggtccatttatttctgacacattgcgtattgatcca
acaaacaatcagctggaagcattggtagaaatttaccgtatgatgcgcccaggcgagccg
ccaacaaaagaatctgctgaaggcttgttccaaggtcttttcttcgcagaagagcgttac
gacctttcaagtgttggtcgtatgaagttcaaccgtcgtttaggtcgtgatgaagataaa
ggtccgggcattctggataatgaagacatcattgcggtactgaagacgttgttggatatc
cgtaacggtaacggcatggtagatgatatcgaccatttgggtaaccgtcgcgtgcgttct
gttggggaaatggcagagaaccaattccgcgtaggtttggttcgtgttgagcgtgctgtt
aaagagcgtctgtctatggcagaagctgatggcttgatgcctcaagatttgttgaacgct
aaaccagttgctgctgcgattaaagagttcttcggttccagccagctgtctcagttcatg
gaccaaaacaacccgctttctgaggtaactcataagcgtcgtgtttctgcgcttggcccc
ggtggtttgacgcgagagcgtgcgggctttgaagttcgagacgtacacgcaacacactac
ggtcgtgtttgtcctatcgagacaccagagggaccaaacatcggtttgatcaactcgttg
tctacgtatgcgcgtactaacagctatggtttccttgaaacaccttaccgtaaggttgtt
gatggcaaaatgacggatgaaacggtttacgtttccgctattgatgaggcgaagtacgta
atcgcacaagcatccgttaatgttgacgaagaaggccgtttggttgacgaattggttcag
gtgcgtcacatgcacgaaaccactttgttggcaaaagaaaaagtgaacttgatggacgtg
tctccacgccaggtcgtttcggttgctgcttctttgattccgttcctagaacacgatgac
gcaaaccgcgcattgatgggatcgaacatgcaacgtcaagccgttccaacgttaaaggct
gataagcctgttgttggtacgggtatggagcgcaatgttgcgaaagactcaggtgtttgt
atcgttgctcgtcgtggcggtgtgattgagtctgttgatgcaagccgaatcgttgtacgt
gttaactctgaagagacgcttgcaggtgaggcgggtgtagatatatacaacctgaccaaa
tacgtgcgttctaaccagaatacatgtattaaccagcgtactcttgtcatgaaaggcgaa
aaggttgcatctggcgatatcatggcggatggcccttctgttgatatgggtgatttggcc
ttgggtcaaaacatgcgtatcgcgttcatgccttggaatggctttaacttcgaggactcc
atccttgtttctgagcgagtggtagaagaagatcgatttacgtctatccatatccaagag
cttacttgtgttgctcgtgatactaagcttgggcctgaagagattactgcggatattcca
aacgtaggtgaaggcgcgctttctaaacttgattcttccggtgttgtttacatcggtgca
gaagtagagcctggcgatattctagttggtaaagtgacacctaaaggtgaaactcagctg
actccagaagaaaagctgttgcgtgctatcttcggtgaaaaagcgtctgatgttaaagat
acatctcagcgcgttaaaaccggtactcgcggtacagttatcgatgttcaggtctttact
cgtgatggcatcgaaaaagacgaacgtgcgaaatctattgaaaagtctcagttagaccaa
gtacgtaaagatcttaacgaagagttccgtatcgtcgagaaagcgacgtttgaacgtcta
gcggaagcgctagtcggtcagcaagcagaaggcggtcctggtctagcacgtaatgcaatc
attactgaagactacctggctaatttggaccaccctgagtggtttaagattcgtgtagca
agtgaagacgctagtgaacagctagagaaagcgcaagcggctttgattgaacgtcgtaaa
gagcttgatgctaagttcgaagataagaagcgtaagcttcaaactggcgatgacttggcg
cctggcgtacttaagattgttaaagtttatgttgctatcaaacgtcgtattcagcctggt
gataaaatggccggccgtcatggtaacaaaggtgtaatctcgaaaattatgcctgttgaa
gatatgccatacgacgaaaatggtgaccctgtcgacatcgtcttgaaccctcttggtgtt
ccgtctcgaatgaacgtaggtcaggttcttgagactcacttaggtgcagcagcaaaaggt
cttggtcgtaagatcaacgagatgatccagattgagcgagaaaaagctgagacagtgcaa
gaacttcgttctttcttaggtgaggtttataacggtcatgaagatggactgcgctcagct
cgtgtagaagatcttgatagcttcacagatgacgaaatcttaacgctggcatcgaacctt
aaaggcggcgtgcctatggcatctggtgcttttgatggtgctaaagaagcagaaatcaaa
cgcatgttgcgtcttgctggcttgaacgaaagcggtcaaattaagttgtttaacggtcgt
actggtgatgcctttgagcgtccagtaacggttggttacatgtacatgcttaagttgaac
cacttggtagacgacaaaatgcacgctcgttctacaggttcttacagcttggttactcag
cagcctcttggtggtaaagctcagtttggtggacagcgtttcggtgagatggaggtatgg
gcacttgaagcttatggtgcagcatacacactacaagaaatgttgaccgttaagtctgat
gacgtgaatggccgtactaagatgtataagaacatcgtagatggcgatcatcgtatggaa
ccaggcatgccagaatccttcaacgtattggttaaagagatccgttctcttggtatcgat
atcgagttggaaaacgaataa
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