Marinomonas mediterranea: Marme_0438
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Entry
Marme_0438 CDS
T01449
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marme_0438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mme03019
]
Marme_0438
Enzymes [BR:
mme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Marme_0438
Messenger RNA biogenesis [BR:
mme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Marme_0438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
UvrD-helicase
Gag_p24
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADZ89737
UniProt:
F2JZF4
LinkDB
All DBs
Position
457145..458422
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AA seq
425 aa
AA seq
DB search
MSFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL
ELLSKGEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKL
RRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQ
TLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFLIQS
RDLSQVLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVAT
DIAARGIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSDIEN
LIRKPIPRDYLEGFKPVNEVRETRISDKVKKPKKPKKPKSRSTSRHNNGQRSGELARGHK
PTGQR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttctttggggctatctgctcctattctggatgctattaagtcccaaggg
tattccgaaccatcaccaatacaagccatggctattcccgccgttttagaagggaaagac
gttatggcggcggcgcaaacgggtacgggtaaaaccgctgggtttacgttgccaatactt
gagctgctatctaagggcgaaaaggctcgtagtaataatgttagggctttggtattaaca
ccgactcgagaacttgcagcacaggttcacgaaaatgcggcagcctattctcagaacttg
cctcttcgcgctgaagtcgtatttggtggcgttaaaatcaacccacaaatgatgaagtta
agacgcggcgttgacgttctcgttgcgacaccgggtcgattgctggatctgttctctcaa
aatgcaatttcatttaagcagcttgaaattctggtattggatgaagcagaccgcatgttg
gacatgggttttattcacgatattaaacgtattctgaaactcttacctaaagaacgtcag
actttgcttttctctgcgacgttttctgatgatattcgagaattggcgcaaaatgtggtt
aaagacgctgttgaggtttctgttacgccacctaataccacggtagaggtgatcaggcag
agccttatcccagtggataagtcgaagaaaagtgcggcgttaaagtttttgatacagtcg
cgcgacttaagccaagtgttggttttctctcgtacgaagcacggcgctaaccgattagcg
accctgttccaaaaagcaggcattgaagcggcggcgattcatggcaacaaaagccaaggc
gccagaacaaaggcgttagctggctttaagtctggcgaaatcagagtgctggtggccaca
gacattgccgctcgtggtatcgatattgaccagcttccacatgttgttaattttgattta
cccaatgttccagcggactatgtgcatcgaattggccgaactggccgcgcgggtgcaacg
ggtgaagcgatctctttggtgagcgaggatgaagcggatcagttatctgatattgagaat
ttgattcgtaaaccgattccacgtgattacttggaaggatttaaacctgtcaacgaagtt
cgtgagacgagaatttcggataaagtaaaaaaaccgaaaaaaccaaagaagccaaaaagc
cgaagtacgtctcgccataataatggccagcgttcgggagagctggcaagaggtcataag
ccgactggtcagcgttag
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