Marinomonas mediterranea: Marme_2164
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Entry
Marme_2164 CDS
T01449
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Marme_2164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mme03019
]
Marme_2164
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_2164
Enzymes [BR:
mme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Marme_2164
Messenger RNA biogenesis [BR:
mme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Marme_2164
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Marme_2164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADZ91407
UniProt:
F2K4L4
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All DBs
Position
2373682..2375409
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AA seq
575 aa
AA seq
DB search
MDTLSTILAKLNISELRSVQRSAIECLDSGKDCVLNLPTGSGKSLIYQVASLLGDGVGVV
ISPLIALMQQQVTDLKANGINARFLNSSLNKGERYDLEMEIRSGHLDIIYLSPEKILQPS
VLALLDSVKVSCIAVDEAHCIFQWGRAFRPEYGQLGELKQHFPTTPIAALTATSDKAGLE
KIVSGLNLVSPKHYGESVDRPNITLQISQKRKAKEQLLSFILKEAFGQKGIIYCRSRKRT
EEISHWLNTNHIESTFFHAALSEQEKTQRHEAFAAGKINVLVATTAYGMGIDIADVYFVA
HADLPPSIDAYFQEIGRAGRSGKTAKALLLYGLQDVMRGIQQLDHQNEDKTPFLTFVALL
EQRGCRRKSMLAHYGEMHDDCGNCDRCLRKSSEHNVTIAAQKLLSYIYYSKGTAPITAVI
QALIGKRTKAVQNNRLQNYNVFGEGKELSEVQWKTLARKLIAMRFVETYDSGPMLFSLTE
KARQILRSEIQLIMSDDYYYSADYDVNMDNEAVKNTLRWSHQFNQAGAISQNLLLRIAEL
KPQTPAALSRLTGLSMSELKAINADALCNLREEMN
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggatacactgtcgacaattctagccaaacttaacatttctgaactacgctctgttcag
agatccgcgatcgaatgcttggactctggtaaagattgcgtcctaaatcttccgactggt
tcgggtaagtccctcatttatcaggtcgccagtttattgggagacggggttggggttgtt
atctctccacttattgcattgatgcagcaacaagtaactgacttaaaagcaaatggaatt
aatgcgcgttttttaaattcgagtctaaataaaggcgaacgctacgatttagagatggaa
atccgatccgggcaccttgatatcatttatttatccccagaaaaaattcttcagccaagt
gtgttagcgcttctcgactccgttaaggtttcatgcattgccgtcgacgaagcgcattgc
atatttcaatgggggagagcgtttcgacctgagtacgggcaactcggagaacttaaacaa
catttccctaccacccctatcgcggcattaacggcgacgtcagataaagcaggtctcgaa
aaaattgtatctgggctaaatttagtctcccctaaacattacggggagtctgttgatcgt
cccaatataacgctgcagatatctcaaaaaagaaaggcaaaagagcaacttctttccttc
atcttaaaagaagcctttggtcaaaaaggcattatctactgtcgatctcgtaaaagaacg
gaagaaatctctcattggcttaacactaatcacatagaatcgaccttttttcacgcagcg
ctttcagagcaagaaaaaacacaaagacatgaagcgtttgcagcagggaaaataaatgtc
cttgttgccacgactgcctacggcatgggaattgacatagccgatgtttactttgtggcc
cacgccgatttaccgcctagtattgatgcgtactttcaggaaattgggcgagcagggcgc
tcaggaaaaaccgctaaggcgctattactatatgggctgcaagatgttatgcgagggatt
cagcaactagatcatcaaaatgaagacaaaacaccgtttctgacttttgtggcacttcta
gagcaaagagggtgcagaagaaagtcaatgctggcacattacggcgaaatgcatgacgac
tgtggcaactgtgatcgctgtctgcgtaagtcttcagagcataatgtcactattgcggcg
cagaaattgctttcctatatatattattctaagggaacggcaccgatcactgcggtgata
caagcgctcattggaaaaagaacgaaagcagtacaaaataataggttgcagaattacaac
gtatttggtgaaggaaaagaactgtcggaagttcaatggaagacattggccagaaagttg
atcgcgatgagatttgtagagacctatgattctgggccgatgttattcagtctaactgaa
aaagcgcgacaaattttgcgcagtgaaatacaactgattatgtcagacgattattactat
tcagcggattatgatgtaaacatggacaatgaagctgtcaaaaataccttgcgatggtcg
catcaatttaatcaagcgggtgcaattagtcaaaatttactgttaaggattgctgagttg
aaaccacagacaccggctgcactaagtcgattgactggactatcgatgtcagaactaaag
gctataaatgccgatgccttgtgtaacctgcgtgaggagatgaattag
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