Marinomonas mediterranea: Marme_2253
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Entry
Marme_2253 CDS
T01449
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mme
Marinomonas mediterranea
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mme03032
]
Marme_2253
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_2253
Enzymes [BR:
mme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Marme_2253
DNA replication proteins [BR:
mme03032
]
Prokaryotic type
DNA Topoisomerases
Marme_2253
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Marme_2253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Neurexophilin
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ADZ91494
UniProt:
F2JTI0
LinkDB
All DBs
Position
complement(2472807..2475437)
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTGTTSKSTPQERAKQAALTRKM
SPEEKAEYKSKKSRQQLIARMGVDPENNWEAHYEVLPGKEKVVDELKRLAKNADTIYLAT
DLDREGEAIAWHLREAIGGDEARYKRVVFNEITKNAIKSAFDEPSDLDMNRVNAQQARRF
LDRVVGFMVSPLLWSKVARGLSAGRVQSVAVRLIVEREKDIRAFNPEEFWELDALLATAS
KEQVKFETLKYLGKEYRPTSQIESDEHVARIQNSGFVVSNREDKPTRSKPSAPFITSTLQ
QAASTRLSFGVKKTMMLAQRLYEGGYITYMRTDSTNLSNEAVEALRDFVGEKYGEAYLPK
EPIRYSSKEGAQEAHEAIRPSDVTVTQNMLQGMDNDAHRLYELIRNQFIACQMTPAEYTS
TSITVTAGDYELKARGRILRFDGYTRVLTPVGKKAEDMILPDIQKGDTLGLNELLPEQHF
TRPPARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVDNRRFYAEKMGDIVTERL
VGSFSQLMNFSFTAQMEEQLDEIAQGEDDWIRTLDAFYADFSNTLTKAEHPEEGMLQNQP
TPTDVECPKCGRPMQIRTAATGVFLSCSGYALPPKERCKATINLVSGDEAVAVDDDEGES
KALINKKRCKICDSAMDSYLMDETRKLHVCGNNPSCSGYEVEKGAFKIKGYDGPVIECDK
CSSEMQLKTGRFGKYFGCTNEECKNTRKLLKNGEAAPPKMDPVAMPDLACQKVEDHYVLR
DGATGLFLAASQFPRKRETRAPLVSELIPYMDQIDPKYHFFSDAPVMDNEGRPTVIRYSR
KTKEQYVMTEENGKPTGWKAFHQNGKWVVEEGKKKK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcactggttatcgtggagtcgcctgcaaaggccaaaaccatcaacaaatac
ttgggtaacgactatgttgttaagtcaagtgtaggtcatatccgtgacctaccaactggc
acgacctctaaatcgacgcctcaagagcgagcaaaacaggctgcgcttactcgaaaaatg
agtcctgaagaaaaagcggaatacaaaagtaaaaaatcacgccaacagcttatcgcgaga
atgggcgttgacccagaaaataactgggaggcgcactatgaagttttacccggtaaagaa
aaggtcgtagacgaacttaaacgtcttgctaaaaacgctgacacaatctatctcgcgacc
gatttggaccgcgaaggggaagcgatagcttggcacttacgtgaagcgattggcggtgac
gaagctcgctacaagcgagtggtctttaacgagattacaaagaatgctattaaatcggcg
tttgatgaaccgtctgatttggatatgaatcgagttaacgctcagcaggctcgacgtttc
ttggaccgcgtcgttggctttatggtgtcaccgctactttggtctaaggtcgcacgtggc
ttgtcagcgggtcgagtacaatcggttgccgtaaggttaatcgtagagcgtgaaaaagac
attcgtgcgtttaaccctgaagaattttgggagttagatgcactactggctaccgcgtcg
aaagaacaagttaaattcgaaacgctaaaatacctaggtaaagaatatcgacccacgtca
cagattgaatctgatgagcatgtggcgcgtattcaaaactcagggtttgttgtcagtaac
cgtgaagataagcctacgcgctctaaaccttctgcgccgtttatcacatcgacattgcag
caagcggccagtacacgattaagctttggcgtaaaaaagacaatgatgctggcgcagcgt
ctttacgaaggtggttatattacctatatgcgtactgactcgaccaacttaagtaatgaa
gctgtggaagcgttgcgtgattttgttggtgaaaagtatggtgaagcatatttgcccaaa
gaacctattcgttattctagcaaggaaggcgctcaggaggctcatgaggcaattcgtccg
tctgatgtgactgtgacgcagaatatgcttcaagggatggataacgacgctcacaggctt
tatgaattgattcgcaatcagtttattgcgtgtcaaatgacaccagctgaatacacgtca
acaagtattacggttacagcaggtgattacgaactgaaagcgcgtggtcgaatcttacgc
tttgatggttatacccgtgttctaacacctgtaggaaagaaagcagaagacatgattctg
cctgatattcaaaaaggcgatacactgggtttaaatgagttgttgcccgagcagcacttt
actagaccacctgcgcgctacagtgaagcaagcttggttaaagaacttgaaaagcgaggg
attggccgtccgtcaacgtacgcctcaatcatttcgaccattcaagatcgagggtatgtg
cgtgttgataatcgtcgtttctatgctgaaaaaatgggcgatatcgtaacggaacgactt
gttggcagcttttcacagctaatgaattttagttttaccgctcaaatggaagagcagttg
gatgaaattgcccaaggcgaagacgattggattagaacgctggatgcattttacgctgat
ttcagcaatacgctgacaaaagctgaacacccagaagaaggtatgctgcaaaaccagcca
acaccgaccgatgtagaatgcccgaaatgtggtcgtccaatgcagatacgtactgcagcc
accggcgtgtttttgtcctgttctggctatgcgcttccgccaaaagaacgttgtaaagcg
acgattaaccttgttagcggtgacgaagcggttgcggtggacgatgatgagggtgaatct
aaagcacttattaataagaagcgctgtaagatttgtgattcggcaatggacagctatctg
atggatgaaactcgcaagcttcatgtttgtggtaacaatccaagttgttcgggatacgaa
gtcgaaaaaggcgcttttaaaattaagggttatgatggccccgttattgagtgtgataaa
tgttcctctgaaatgcagctaaaaacaggtcgttttggcaagtactttggttgtacaaac
gaagaatgtaaaaacactcggaagttattgaaaaacggtgaagcggcgccaccaaaaatg
gaccctgttgcgatgccggatttagcttgtcaaaaagtggaagaccactatgtgttaaga
gatggtgcaacgggcctattcttagcggctagccaattcccacgtaagcgggaaacgcgt
gcaccacttgtatcagagttgatcccttatatggatcagattgatcctaaatatcatttc
ttctctgatgcgccagttatggataacgaaggacgcccaactgtgattcgatacagccgt
aagacgaaagagcaatatgtcatgacagaagagaatggcaagccgactggttggaaagca
ttccatcaaaatggtaaatgggttgttgaagaaggcaagaaaaagaaatga
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