Marinomonas mediterranea: Marme_2592
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Entry
Marme_2592 CDS
T01449
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Marme_2592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_2592
Enzymes [BR:
mme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Marme_2592
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Marme_2592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADZ91824
UniProt:
F2JWR0
LinkDB
All DBs
Position
2862706..2866116
Genome browser
AA seq
1136 aa
AA seq
DB search
MDNRFKLNTKPGYKNTFQGIPSTLHAVQLLELSKTNSCPILFIANTVSELNDLEDALSFL
IKNETEVLRFSEWETLPYDAFSPHQDIISQRLETLANLRDTKSSIILTTINAAMTRLCPA
SHIDSQRFHVKTDQSVSTETLANRLTNGGYLNVDTVREHGEFSIRGALMDVFPMGADAPI
RIDWFDTEIDSIRYFDPETQRSTEKVKEVKILPAKEFPTTQNGIQFFRQRFRERFDVDPL
SSPIYQDISSGLMPGGIEYYLPLFFEETDCLFDYLHSSTCIVRSKTVNDYIASSLLDIKS
RHESLNYDLERPILTPKEVFLEDSEIFAELNKFAAAVFDEEGTNDVFSTIPELTVNSKLD
NPLESLSKFLQSQNLPILICAESAGRREALIELLNKNNLKPEYIGDWQRFTDKKPTFAIT
EGLLTRGFIQNEAYAVIAESELMGERVSQQRRRKHSDVNEDAIIRNLTELRLGAPVVHID
HGVGRYLGLTNLEIDGQETELLTLGYANEAKLYVPVSSLQLISRYTGADEDNAPLHRLGT
EKWSIAKQKAAEKARDTAAELLEIYAKREARSGYAFSKPDDQYALFSASFPFEETPDQQM
AIDAVIKDMSTGKPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVLVPTTLLAQQHYE
NFCDRFADWPVQIELLSRFRSGKQTKEAISRLEEGKSDIVVGTHKLIQGDIQFSNLGLVI
IDEEHRFGVKQKDQFKALRAEIDVLTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSVK
TFVKKKDDHQIKEAILRELHRGGQVYYLHNEVETIQKAAEFITELVPEARVIVGHGQMRE
RELEQVMSDFYHKRSNVLVCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPQDRKVTGDAEKRLEAITMADTLGAGFTLATHDLEIRGTGELLGEGQSGHI
EHVGFSLFMEMLDRAVKSLKNGEAPNVDITSPMQTEINLRIPALIPDDYLGDVHTRLMLY
KRIANAETEDALKELQVEMIDRFGLLPDATKNLFRQTSLKLKAEKLGIVKIEANQKEGKL
HFGKETPVDPMKLIQLIQKKPNQFRLAGADTLRYVVSMTSADDRFQQTYKTLELLH
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggacaaccgcttcaagctaaacactaagcctggctacaaaaacaccttccaaggtata
cctagcacattacatgccgtacagcttcttgaactcagcaaaacaaactcatgccctatt
ttgtttatagcaaacacggtttcagagcttaatgaccttgaagacgcgctgtccttttta
ataaagaatgaaaccgaagtactgcgatttagcgaatgggagaccctaccttacgatgct
ttttcaccgcatcaggatattatttctcaacgcttagaaacactagcaaaccttcgtgac
acaaaatcatccatcatattaaccactataaatgcggcaatgactcggctatgtccagca
agccacatagactcacaacgcttccacgttaaaaccgatcaaagcgtttctacagagaca
ttggctaaccgcttaacgaatggcggctatttaaatgtagacactgttcgagaacacggc
gaattttctatacgcggcgctcttatggatgtttttccgatgggagcggacgcccctatt
aggattgactggttcgacactgaaatagacagcatccgatactttgaccccgaaacacag
cgcagcacagagaaagttaaggaagtaaaaatactgcctgcgaaagagtttccaacgact
caaaatggcatacaattttttcgtcagcgcttcagggaacgtttcgacgttgacccgtta
tcgagtcctatttatcaagacatatcatcaggactcatgcctggaggcatcgagtactac
ctgcctcttttcttcgaagaaacggattgcctttttgactacttacacagtagtacctgc
atcgttagaagcaagacagtcaatgactatattgcctcttcactgttggatataaaatct
cgacacgagtcattaaactacgatctagagcgaccaatactcacgccaaaagaagtcttt
ctagaagacagcgaaatatttgccgagttaaacaaatttgccgccgcagtctttgacgaa
gaaggcacaaacgacgtcttctctacgatacccgagctcaccgtcaactctaaactcgac
aacccactagagagcctaagcaagtttctacaatcacaaaacctgcctatcttaatctgc
gcggaaagcgccggcagacgagaggctttaatagagctgttaaacaagaacaacctaaaa
ccagaatacataggcgactggcaacgattcaccgacaagaaacccacgtttgcgataaca
gaaggacttctaacgcgcggcttcattcaaaacgaagcctacgcagtcattgcagaaagc
gaactcatgggtgagcgtgtgtctcaacaaagacgacgcaaacactccgacgtaaacgaa
gatgcgatcattcgaaatttgaccgagcttcgcttaggcgcgcctgttgtccacatcgat
cacggagttggccgttatctaggacttaccaatttagaaatagacggacaggaaactgag
ctactgacgcttggctacgccaacgaagcaaagctttatgtcccggtatcgtccctacag
cttatttcaagatacacgggcgctgacgaagacaatgcaccactgcatagactgggcaca
gaaaagtggagcatcgccaaacaaaaagccgcagagaaagctcgcgacacagcggcggaa
ctgttagaaatatacgcaaaacgtgaagcacgatcaggctacgcattttccaaaccagac
gaccaatacgccttattttcagccagctttccattcgaagaaacgccagaccaacaaatg
gcaattgacgctgttataaaagacatgtcaacgggcaaaccgatggatcgtttagtatgt
ggtgacgttggctttggtaaaactgaagtcgcaatgcgtgctgccttcttagcggttcaa
agcggcaaacaggttgctgtcttagtgccaaccacactgttagcccagcagcactacgaa
aacttctgcgaccgctttgcggactggcctgttcaaattgaactactgtcccgttttcga
tcaggtaaacaaacaaaagaagccatctctcgacttgaagaaggcaaatcggacatcgtc
gttggcacacacaaactcatacagggcgacatccagttttccaatttgggactggtaatt
atcgatgaggaacatcgatttggcgtaaaacagaaggatcagtttaaagcacttcgagca
gaaatcgacgtactaacactgactgcaacaccaatccctcgtacattgaatatgtcgctg
tccggcatcagagacctttcaatcattgcaacaccgcctgcgaaacgcttatcagtcaaa
acattcgtcaagaaaaaggacgatcaccaaattaaagaagccattttgcgggaactgcat
cgcggtggacaggtttactaccttcataatgaagtcgagaccattcaaaaagccgccgaa
ttcataacagaactggtacctgaagcacgcgtaatagtcggtcatggacaaatgcgtgaa
cgagaactagaacaagtcatgtcagacttctaccacaaacgttccaacgttctagtgtgt
tcgactattatcgaaacaggcatcgatatcccgaacgcaaacaccatcatcataaacagg
gccgacaaatttggccttgctcaacttcaccaacttagaggtcgggtcggccgatcacac
caccaagcttatgcttacttactaacccctcaagaccgaaaagtaacaggcgacgcagaa
aagaggttagaagccattaccatggccgacacgcttggagcaggctttacacttgccaca
cacgacttggaaattcgcggaacaggtgaactactaggcgaaggtcaaagcggccatatc
gagcacgtcggattctcgctgtttatggagatgctcgatcgggcagtcaagtcgcttaaa
aacggagaagcccccaacgtggacatcacctctccaatgcaaactgagatcaacttacgc
attcccgctctcattccagacgattacctaggcgatgtgcacacacgactcatgctctac
aagcgcattgcaaatgcggaaaccgaggacgctctaaaagaactacaagtcgaaatgatc
gaccgttttggcttactgcccgacgcaaccaaaaacttatttaggcaaacaagcctaaag
ttaaaggccgaaaaattaggtatagtaaaaatagaagccaaccaaaaagaaggaaaactt
cattttggtaaagaaacaccggttgatccgatgaaactcatccagctcattcagaaaaag
ccaaatcagtttagattagctggagcagacaccttgcgatatgttgtaagcatgaccagt
gccgacgacagattccaacaaacctataagaccttggaactattacattga
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