Marinomonas mediterranea: Marme_4178
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Entry
Marme_4178 CDS
T01449
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mme
Marinomonas mediterranea
Pathway
mme03420
Nucleotide excision repair
mme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Marme_4178
03430 Mismatch repair
Marme_4178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mme03400
]
Marme_4178
Enzymes [BR:
mme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Marme_4178
DNA repair and recombination proteins [BR:
mme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Marme_4178
MMR (mismatch excision repair)
Other MMR factors
Marme_4178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ADZ93377
UniProt:
F2K1P3
LinkDB
All DBs
Position
complement(4640383..4642593)
Genome browser
AA seq
736 aa
AA seq
DB search
MDVSFILDALNDKQREAVAAPLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAV
TFTNKAAREMQGRIEQLVGLPPQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQL
RLVKRIMREFNIDDTRWPPKQVAWFINGQKDEGRRAAHVPDSHDPFSKGMRELYYHYEEA
CERNGLLDFGELLLRAHELMLTNPALLKHYQQRFVHVLVDEFQDTNTIQYAWLRVMVGDT
GTITAVGDDDQSIYGWRGAKIENIQNFSKHFNDVATIRLEQNYRSTGQILKAANGLIQNN
DDRLGKELWTDSGDGDPISLYAGFNEQDEARFILEIIKKWRDDGTALKDMAILYRSNAQS
RVIEECLVREQLPYRIYGGHRFYDRLEIKNALAYARLAVDPNDDGAMERVINVPPRGIGE
RSIGTLREIARDQGCSMWQAAEHIVQHGVMPARASNAIKNFLQIIDGMGNTLIQPDLGLG
DVFEHIIQEAGLIPHHEKEKGEKGEARIENLKELVSAASGFSWSEDDEEFSSPMMAFLDQ
AVLDAGEAQADEYQDSVQLMTLHSAKGLEFPLVFLTGVEENLFPSKMSFEEPGRLEEERR
LCYVGITRAMEKLYITYAESRRLHGSESFNSPSRFIREIPQECIEEVRLRSQVARPVSMQ
RHNYQGTLQKQNQSILHGYQVPETNVSMGDRVKHPVFGEGLVINYEGQGPQARVQVNFDT
EGTKWLVLSFAKLEVL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttattctcgatgccctaaacgacaaacagcgtgaggccgttgccgcg
ccacttcaaaacagtttggtactggctggcgctggttccggtaaaactcgcgtactggtt
catcgtatagcgtggctaatgcatgcctatgagctatcaccttatagccttatggccgtt
accttcaccaacaaagcggcgcgagagatgcaagggcgtatcgagcagcttgttggatta
ccacctcaaggtatgtgggtgggaaccttccatggtttggcccatcgcctgcttagagcg
cattggcgcgatgcagggttgaaggaaaacttccaaatcatggacagcgatgatcagctt
cgtctcgttaaacgtatcatgcgagagtttaatatcgatgatacgcgttggccgcctaag
caagtggcttggtttattaacggccaaaaagacgaaggtcgacgtgctgctcatgttccc
gactcgcatgatccattttcaaaagggatgcgagagctttattaccactacgaagaagcg
tgtgaacgcaacggcttactggattttggtgagttattgttacgagcgcatgaattaatg
ctgacaaatccggctttattaaagcattaccaacaacgctttgtgcatgtgctggtggac
gagtttcaggacaccaacaccattcagtatgcgtggcttcgtgtgatggttggtgatact
ggcacgatcaccgcagtgggtgatgatgaccagtcaatctatggttggcgtggcgcaaaa
attgagaatatccaaaacttctcaaaacactttaatgacgtggcgacgattcgtcttgaa
caaaactatcgttcaactgggcaaattctaaaagccgccaacgggctgattcagaacaat
gatgatcgcttaggtaaagagctttggacagacagcggcgatggcgacccgatttccctt
tatgctgggtttaatgagcaagacgaagcgcgctttatattagagattattaaaaagtgg
cgcgacgacggaaccgcgttaaaagacatggcgattttatatcgttctaacgctcaatct
cgtgtgatcgaagaatgcctcgttagggaacagttgccttatagaatttatggtgggcac
agattctatgatcgtttagagatcaaaaacgcattggcgtatgctcggttggcagttgac
ccgaatgacgacggcgcaatggagcgtgtaattaacgtaccaccgcgtggcattggcgaa
cgcagtattggtaccttgcgagagatcgctcgagatcaaggttgctctatgtggcaggcc
gcagagcatatcgtgcagcatggtgtgatgcctgctcgcgcttccaatgcgattaagaac
ttcttacagattattgatggtatggggaatacgttaatccaacctgatctaggtttgggt
gatgtctttgaacacatcattcaagaagcgggtttgattcctcatcatgagaaggagaag
ggtgaaaaaggcgaagcccgtattgagaacttgaaagagttagtcagcgccgcaagtggt
ttctcgtggtcagaagatgacgaagagtttagctcgccaatgatggcattcttggaccaa
gcggtattggatgcgggtgaagctcaggcggatgagtatcaggattcggttcagttgatg
acgctgcactcggcgaagggcttggaatttccattggtctttttaactggcgtggaagag
aatttgttcccttccaaaatgtcgtttgaggaacctggacgcctcgaagaggagcgtcgc
ctttgttatgttggtattacgcgggccatggagaagctctatattacctatgcggaatcg
cgtcgattgcatggcagtgaatctttcaatagtccttctcgttttattcgtgaaatccca
caagagtgtattgaagaagtgcgcctgcgctcacaagtcgcaagacctgtttcgatgcag
cgacacaactatcaaggcacactgcaaaagcaaaatcagagcatattgcacggttatcaa
gtacctgaaaccaacgtttcaatgggcgaccgagtgaagcatccggtcttcggtgaaggg
ttggttattaactacgaaggacaaggcccacaggccagagttcaagtgaacttcgatacc
gaaggtacaaagtggcttgtgttgtcttttgctaaattggaagtgctgtaa
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