Malurus melanocephalus (red-backed fairy wren): 130572375
Help
Entry
130572375 CDS
T09178
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130572375 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmea03021
]
130572375 (PCF11)
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130572375 (PCF11)
Transcription machinery [BR:
mmea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130572375 (PCF11)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130572375 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
130572375
NCBI-ProteinID:
XP_057220021
LinkDB
All DBs
Position
Unknown
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPAPHMTVKPPHQTVVQSEKNKPSPSPPLHDVKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTSQSETKANKTAQAEKQNSTKSEKSKGSEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDNKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRN
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTATEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGLKQSHAEEGTQAARDDRNSS
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALAKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRFASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYPLPDALLSGIECEQAKAKRGVQFD
RKEPFTERSRRHSPVSGTTRPFAENLSPLESRRRLEEQRATKGARGSDPYDSWGESDEFR
DALRQQGKSAAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAGGSSS
RIDGPAGQAAMRFEGPLVGAGTSQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPM
GPHGPSSGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGSLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSAYGQGGPFVEHPGQGYNGPAHGMQFQRPDLFD
GSPGPNFNGPAGPGAQSFPLRSAGHYFEEKGLQGPQFGNFSNMPMGSNQVSLMSAQAGHY
GQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQA
NETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNTMLDIVKQEPEESCDSPKIKEEPDDTPPA
CAEESTPASTEIKTEPEDSV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaarcctcacatcaacatgctgacc
attctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagttacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaactgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtatcccttagtgttcaacag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccgcacct
catatgacagttaaaccacctcatcagactgttgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatgtcaaaatagtaaacagggatcctcggcttaataggatg
ggtcaacattcttctcatactaaggatcagtctcataggaaagaattttcaccaagtgtg
accagtcagtctgaaacaaaggcaaacaaaacagcacaggctgagaaacagaactcaaca
aagtcagaaaaatcaaaaggaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcctgatactaaagataataaa
agccaggaatgtgaaagcactaaggtttctgacattagtaagcgggatccaagactgaaa
agacatcttcaagacaagtcagagggaaaggaagaggaggtcaaagaaaagaggagaaat
acagagaagaaggaaaaagaggagcataagacttgtgaacatagaccagtggggagcaga
aataaagtgattaacggtgctgttcagaaacaagacaccgctacagaggagtcagaaaaa
cagggtggaaaacaaggaagatcaagtagtagaaaacggtcacgatcacgctctcctaaa
gcaagatcaccatctacgcattctccaaaaagaagagagaggagatcacctaaaagaaga
ctcaggagtttatctcctacttcatcaactcctaaaattggaaagatacgtcagataggc
cttaagcagtctcatgctgaggaaggtacacaagcagcaagagatgacagaaattctagt
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaggaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaattcacagcagaatgatgaacaccaagcacttgctaaatcccctcaccaaagacac
cgggaaaactggccggctggtaaaggaattttatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagcaaaaga
gaattacttaagaaggctaatgaccgcttcgcgtctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatca
gatgcagaattaacatactatgaacataaagctaaactaaaaaggacacaagttcagcat
tcattgtcaagacttgatctgttggatcctgatgatattttggattatcctctacctgat
gcattgctttctggaatagaatgtgagcaagcaaaagccaagcgtggtgtacagtttgac
agaaaagagccatttacagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttgccgaaaacctgtcaccgcttgagagtcgacggagacttgaagaacagcgtgct
actaaaggagcaagaggttctgatccttacgacagctggggagaatcggatgaatttaga
gatgctctgagacaacagggaaaaagcgcagcagagttccagaaaatagatggagatgca
ctttgcaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtccccattcagtgaacgtttcaaaagagctagatatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagagaata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccaactgctgcaagg
gttggggtggatggacaaggaagtcctttcgttgacggtcctgctggtggctcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtgggggca
ggcacatctcagtttgatggaccactggcaggagcagggggagctggagccctaagattt
gatgggccaccagggcagctggcaggggccctgagatttgaaggacccccaggtcaggtt
ggtgggggaggtccactgcggtttgagggccctcttgggcctttgcgatttgaggggcct
gctgggcagcctgtgggcggtcctagatttgaaggacctggagtcggtctcaggtttgag
ggtcctcatggtcagccttcaggtggcctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgaggggccacatttacagccattg
gggccccatggacaacctggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccatcaagtggtgggctcaggtttgaggggccacacggaccatcaggt
ggtgggctgagattggaaggaccacgtggtcagccaggtctaggtcctaggttgattgat
ggaccagtacaccagggagctggtggacttcgatttgatggtcctcttggtcgggctggt
ccaagatttgatggctgtcacggagctggatttgatggtcagcctggatcactgtctctc
ctgcaaagatttgatggaattcatggacagcctggtccacgattggcacctggccaacag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcagcatatggacaaggtggtccatttgttgaacatcct
ggccagggttacaatggaccagctcatggaatgcagttccagagacccgatttatttgat
ggttcgcctggaccaaatttcaatgggccagctggcccaggagcacagagcttcccactg
agatcagctggacattacttcgaagaaaaaggccttcagggtcctcaatttggaaatttc
agtaatatgccaatgggaagtaaccaggtttctcttatgtctgctcaagcaggacattat
ggtcaaggtcagcagtatttgccaaatcctggaagttttgtccagaatccggcaggagcc
cttcctcattcatatcctgataaccaccttggacaggttgatgtgaacgaattgtttgct
aagctgctgaaaacaggaatcctcaaattgtctaaaactgattccacctcagcacaagca
aatgaaacatcagcccagccgactgctgaagaagaagatgatgatcagaatgaagatcaa
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgacagtgtt
ataaatcgactgtacactggaattcagtgttactcttgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttagactggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaattacgcacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttcttcgaaaaagctcat
gaagaggttgtgttgaagacgcaggaagctgcgaaagaaaaggagtttcagagtgtccca
gctggaccagctggagcagtcgagagctgtgaaatttgccaagaacaatttgaacaatat
tgggatgaggaagaggaagagtggcatctgaagaatgctatcagggtagatgaaaagatt
tatcatccatcttgttacgaagattaccaaaatacatcatcatttgattgcacaccatct
cccagcaagactccttcagaaaatccattaaatacaatgttggacattgttaaacaggaa
ccagaagagtcctgtgactcacctaaaatcaaagaagaacccgatgacacccctcctgcc
tgtgcagaagagagcacacctgcatctacagaaataaaaacagaacctgaggattctgtt
tga
DBGET
integrated database retrieval system
