Malurus melanocephalus (red-backed fairy wren): 130572872
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Entry
130572872 CDS
T09178
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmea03021
]
130572872 (SCAF8)
03041 Spliceosome [BR:
mmea03041
]
130572872 (SCAF8)
Transcription machinery [BR:
mmea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130572872 (SCAF8)
Spliceosome [BR:
mmea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130572872 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130572872
NCBI-ProteinID:
XP_057220861
LinkDB
All DBs
Position
Unknown
AA seq
1358 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAISNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
TNVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKETTQTTQSAAVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMPVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTSLV
QPPLPIAQETMKDVPFTSLVLPVGTVTSNLPTPTLSAGSVFNPLPINKPESDDKGTHLTD
LQISSSENNRSVQSDVSSSSGLIGGVPPPNVSTSSGLTGEGPPATVSSSSGLAGGVQPPS
ASTSSGLVGGVQPPTVSSNSGLAGGVQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPN
VSSSSGLLAGVHPPSVSNSPGLLTGMQPPXVSSSSGVLAGVQPSSVSSNSGLLIMPPPNV
STSSGLMGVPPPNLSSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPG
PRFPLIQPGLPPQRSIPPPAILDPSLHPPPPRGPFPPGDIFNQPERPFGTPGRQNIDNIS
NPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPV
DGREHFARPHIDIRENFGRPGIDNLGRREHFGFSSEKHWGQRGDYDEREHHAFPIYGGPK
GFHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREI
NGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDD
PELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaatagcgagttgtactcgctaaatgattacaaaccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aagcatgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggtg
cctggtctatatgtcattgactccattgtgagacagtcgcggcatcagtttggacaagaa
aaggatgtatttgctccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattatacagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctataagcaacaatacgccaggt
acacctgtgactccagttaccccagccaatgtggcgcagagtttacctgatccttgggta
tctcagattgctaacacagacacgcttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcgctacttcaagcactggatgctggtcttgttgtccagttacaggccctcacagcacaa
ctcacagctgcagctgctgctgctaatactcttaatccactggaacagagtgtctctttt
aataagaagctgatggacaggtttgactttggggaagaatctgaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccagaatctgtgaacaactccctt
tttcaccaactagctgagcagctacagcaacaaaatttagaacatctcagacaacagctt
ttggagcagcagcagcctcaaaaggcaagccctgaggagaatcaggaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagtagtcaacagcagtttttagaagtggaa
acaaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcgccaaggaaacgaaggtctagatcrcgg
tctggttctcgtaagcgtaaacacagaaaacgttcgcgctcaagatcaagagaaaggaag
agaaagtcatctcggtcgtactccagtgaaagaagggctagggagagggaaaaagaacgt
cagaaaaagggattgcctcctatacgctcaaaaacactaagtgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacagcaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagaggatgtgcttatgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaagcttagttctgggtcttataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctgggagtttcctatattccatgggagaaagtgaaattggat
gatttggaaggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagccgctaaagaaactactcaaacgacgcagagtgctgca
gttgataagagtacagttattacaacacagacagaagcgtacacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgtcagcttggttccacctgcatttcck
gtcacaatgcctgtccctcctcctggttatagcccaattcctcctccacccttcttgaga
gcaagtttcaatccttcacaaccacctccaggctatatgcctcccccagttccacctgtt
gtcccaccacctgttgtcccaccacctgttgtcccaccagttgttccaacatctttagta
cagcctccattaccaattgcacaagagacgatgaaggatgttccttttactagccttgtt
ctaccagttggcacggttactagcaatctacctactccaactttatctgctggaagtgtt
tttaatcccctgccgatcaataaaccagaatcagatgacaaaggaacacatcttacagac
cttcagatttcttccagtgaaaacaatagatctgtgcaaagtgatgtctcgagtagctct
ggacttattggaggagtgccgccacccaatgtctcaaccagttctgggcttactggtgaa
gggccaccagccactgtctcaagtagctctggacttgcagggggagtacagccgcccagt
gcttcaaccagctctggacttgttggaggagtgcaaccaccaactgtttccagcaattct
ggtcttgcgggaggagtgcagctacctgctgtctccagtagctcttctcttgctggcggg
attcagccaactaatgcctcaagtagctctggacttatggctggagtgccaccaccaaat
gtctcaagtagctcagggcttctagctggagtgcatccaccaagtgtctcaaacagccct
ggccttctgacaggaatgcagccacccaktgtttccagcagctcaggagttctggcagga
gtacagccatcaagtgtttcaagcaactctgggcttctcataatgccaccacccaatgtt
tcaactagttctggacttatgggagtgccaccaccaaatctttcaagtaattctggactt
ctggcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcaa
agaatgccaggaatgcctcttatagatatccgtccaggcctgatgcctcattcgcctgga
ccaaggtttccattaatacagccgggattgccaccacagcgtagtatccctcctcccgca
atccttgatccatctcttcacccaccaccacctmgaggtccttttcctccaggagatatt
tttaatcaaccagaaagaccttttggaacaccaggaagacaaaatatcgataacatttct
aatcctgagaaaagactrccacttggaggtgataacattcaacaggagggagacagagat
tatcgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtagatgtc
agagattctgttggacgaccaccagttgatccaagagagggtataggaaggcctccagta
gatggaagagaacactttgcaagaccacatatagacatcagagaaaattttggaagacca
ggtatagataaccttggccgaagagagcattttggtttcagttcagaaaagcactgggga
cagagaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaa
ggcttccatgaagaccgagagaggtttcggcatgtaaattataggtttgatagtagaagt
ggtcccaattggaatagaggatttgaacaagatgctcacagagattttgatgaccgcaga
agaccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaatt
aatgggaacagatttggaagagacagaatgtcaaacaactggatcccacctccacatcca
cgggtttttgaatattttgatggggccacttctcaacgcaaagctgataatatgccccag
gtaaatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggatgat
ccagaactttatgaaaaactgacatcttccgtcgagataaacaaagagaagagtgacaca
gaagctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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