Malurus melanocephalus (red-backed fairy wren): 130573989
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Entry
130573989 CDS
T09178
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea04382
Cornified envelope formation
mmea04510
Focal adhesion
mmea04512
ECM-receptor interaction
mmea04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130573989 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130573989 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130573989 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130573989 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmea04147
]
130573989 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
mmea00536
]
130573989 (COL4A4)
Exosome [BR:
mmea04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130573989 (COL4A4)
Glycosaminoglycan binding proteins [BR:
mmea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130573989 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130573989
NCBI-ProteinID:
XP_057222866
LinkDB
All DBs
Position
Unknown
AA seq
1678 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSSQGIDGGGYAYVDPCGGQDCSICRCFPEKGSRGQ
PGELGAQGPIGSLGSIGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYISHFGKGPP
GERGDPGPPGMPGPRGSRGTTGPSGYPGHPGLPGVPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGATGYRGPRGPKGVLGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEQGLPGPPGAVGTPPLPIK
GPQGDPGFPGPVGDTGSVGPIGPPGVLGRPGYDGRSLPGLPGVSGAPGPQGFQGDPGLPG
TGEPIPGRPGYPGPPGLPGQPGRQGLPGLPSVICPDRGIPGEPGAKGQIGLPGRKGAKGE
KGSQGLCLCAAGPPGPRGVQGPPGTQGKKGQMGYPGRHGEKGDPGLSGAVGSPGLPGTPG
SAGQHGEKGEKGDPGRVRIKGLKGERGPTGVPGYPGQRGLDGRDGEPGLPGEKGAEGDSG
VSVPGDKGFSGLPGRPGMKGQMGLPGLGLPGPPGVRGSPGDFGDMGNVGPPGPKGQKGDT
VCITSPYPGSPGPPGFKGVQGQKGLKGLPGHPGPNGYDGLKGXRGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGRNGLPGPPGIDGPKGLAGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGVPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGLPGSPCVPGLPGPPGLRGVTGLPG
PQGLPGFKGQRGERGLAGPPGVKGLKGSPGSXGLPGPPGSRGPPGLPGNIGPIGFPGETG
SKGIQGPPGFPGLPGIQGPTGIFGVKGEQGQMGLPGPGGECGDTGIKGEMGPPGDSGYVN
LRLEKGQMGDPGFPGEHGFPGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGVPGPKGFQGMTGFQGEPGDQGDLGLPGNPGYPGLTGPKGCKGKRGDPTPLLGTHGRK
GPPGDPGVPGLSGFPGEKGLSGIQGQPGRPGSKGDPGYPGPPGLPGATGPQGLPGEPGEE
GKPGILGPPGLQGLPGXQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEMG
PKGDRGEPGWPGVSIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGIRGXPGNPGPPGETIFVRGDPGDMGIRGAPGNPGPRGPQGARGPPGSQGREGXKGPMG
IHGPQGPPGAVGQPGDQGFPGRPGPRGPTGDPGEPGQVDDSCPTIPGPPGEAGQRGEDGS
AGLPGPIGHPGPQGIKGEEGSCGLPGQDGLPGAPGPPGDQGSRGEQGXAGAQGPPGQTGV
PGQPGPHIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGLAGS
CLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMVPLSEEEIQPYISRCAVCEAP
AQAVALHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFI
ECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKHG
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcatctcaaggaattgacgggggaggatatgcatatgttgatcca
tgtgggggacaggattgttcaatttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagcccaaggtcctattgggtccttggggtctataggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggactc
cctggaagggaaggacccagaggcaaacacggcttggacggctgcaatggctcaagggga
gacccaggatttccaggagaaaacggttacatgggaccaagaggtccttatggaattcca
ggacaaaaaggagaaaaaggaaattcagtgtatatttcacattttggaaaaggacctcca
ggagagagaggtgatcctggaccccctgggatgcctggtcctagagggtcaagaggtaca
acgggcccatctggataccccggscacccaggcttgcctggtgttccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacatyggactgcctgggccacctgggtcaccactgttagttggacctccyggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggagcaacaggatacagagggcca
cgtggacctaaaggagtacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgcaggttttcctggaatgaagggt
gaaacagggtttgctggttttcctgggcaacctggctatccaggcatacagggggatcca
ggagaacaagggctcccaggtcctcctggagctgttggaactccaccacttcctataaaa
ggtccacaaggagatcctggatttccaggtcctgttggtgacacggggtcagttggacca
attggtcctccaggcgttctaggaagaccaggatatgatggaagaagtctgcctggactg
ccaggagtaagtggggcaccaggaccccaaggttttcaaggggaccctggtttgcctgga
acaggagagccaatcccaggaagacctggatatcctggaccaccaggcttaccaggacag
ccaggaagacaaggcttacctggactacccagtgtaatctgtcctgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagtcaaggtctctgcttgtgtgctgctggtcctcctggtccccgtggcgtgcaa
ggacctccaggtactcaaggaaagaaaggacaaatgggataccctggaagacacggagaa
aagggygacccaggcttatctggtgcagtgggatcaccagggctccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggacctactggagttccaggatatccaggccaaagaggtctt
gatggcagagatggggaaccaggattgcctggggaaaaaggtgctgagggagattctgga
gtatcagttccaggtgataaaggattctctgggctcccgggacgtcctgggatgaaagga
cagatgggattgccaggtttggggcttcctggccctcctggagtcagaggyagcccagga
gactttggtgatatgggtaatgttgggccacctggtccaaaaggccagaaaggtgatact
gtctgcattacatcaccatatcctggaagtccaggtcccccaggttttaaaggtgtccaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctatgatgggcta
aaaggccrtcgaggaaggccaggagcaggaatccctgggccagaaggctttcgaggtaca
gctggggatcctggtgatgaaggtgaaagaggatctacaattgatggcagaaatggtctc
ccaggtccacctggcatagatgggccaaaaggtcttgcaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggagcacagggagcaaggggt
aatccaggcgttcctggacttcaaggacaacctggcaccccgggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtgggagcaccaggctgtccaggcttgcctggttca
ccgtgtgtcccaggcttaccagggccaccaggactcagaggtgtcacrggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagagaggggcctggctgggccccct
ggagtcaaaggtctcaaaggctctccaggctcacmaggtctcccaggtcctccaggctca
agaggtcccccaggtcttccaggcaatataggacctattggtttcccaggagaaacagga
agcaaagggattcaaggacccccaggattcccaggactcccaggaatacaaggcccgaca
ggaatctttggtgtaaaaggtgaacaaggacaaatgggtctacctgggcctggtggagaa
tgtggagatacaggaataaaaggtgaaatggggcctccaggagacagtggctatgttaac
ctccgtcttgaaaaaggacaaatgggagacccagggtttcctggtgagcatggatttcca
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccagggaag
aatggtgttccaggactgccaggtgaccaaggtgacactggagtgatgggatttccagga
tcacggggtgtgcccggaccaaagggctttcaaggaatgacaggttttcaaggagaacca
ggtgaccagggtgaccttggcttaccaggaaaccctggatatccaggactgactggcccc
aaaggatgtaaaggcaagagaggtgacccaactcctctgcttggtacacatggtcggaaa
gggcctccaggagatccaggagtaccaggactcagtggatttccaggggagaagggttta
tcaggtatccaaggacaacctggaagaccaggatccaagggtgaccctggatatccagga
ccacctggattaccaggagctacaggtcctcagggattgccaggtgaacctggagaggaa
gggaaacctggaattttgggacctccaggattgcaagggttacctggaycccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaagggc
tctgcaggagctccaggtcaaagcgaaacagggcccccaggatactcaggagaaatggga
ccaaaaggagacagaggggaacctggatggcctggtgtttctattccaggtccccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttcccctggtcctccrggtgatcagggattacctggttta
gatggcatcagaggtcawcctgggaatcctggtcctcctggagaaactatctttgtacga
ggagatccaggggatatgggcattcgaggggcaccaggtaatcctgggccaagaggacca
cagggagccagaggccctccagggagccaaggaagagaaggccygaagggtcctatgggg
atccacggcccacagggtccacctggtgctgtaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtgaccctggtgaaccaggacaagtagatgat
tcatgccctacaatcccaggacctcctggggaagcagggcaaagaggagaggatggctct
gcaggattaccagggccaataggccatcctggaccccaaggcataaaaggtgaagaagga
tcatgyggcctgccaggtcaagatgggctacctggggcacctggaccaccaggggaccaa
gggagcagaggagagcaaggatmtgctggggcacaaggtccccctggccagactggtgtc
ccaggacaaccaggcccccatattagatctgccagtggattcttgctcgtccttcacagt
cagtcagacagagaaccactctgcccccagggaatgccaaagttatggactggctatagt
ctgctgtacctggaaggacaagagaaagcccataatcaagatcttggtctggcaggatcc
tgcctccctgtgtttaataccatgccatttgcctactgcaacatcaaccaagtgtgttac
tacgccagccgaaatgacaagtcctactggctgtccagtgctgctcccctgcccatggtg
ccgctctccgaggaggaaatccagccctacatcagcagatgtgctgtgtgtgaggctcca
gcacaggcagtggcactgcacagccaggaccagtcaattcctccctgcccactcaactgg
aggagcctttggataggatactcctttttgatgcacactggctctggtgatcagggtggt
ggacagtcccttatgtcacctggaagctgcctggaagacttcagatcagcaccattcatt
gagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagtttctggctg
accaccgtgatgcctgagctgcagttygcatcagcccccctgtcagggactcttaaagaa
ggacaagagcagaggaagaaaatcagtaggtgccaggtatgcctgaagcatggctaa
DBGET
integrated database retrieval system
