KEGG   Malurus melanocephalus (red-backed fairy wren): 130574100
Entry
130574100         CDS       T09178                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
mmea  Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03030  DNA replication
mmea03410  Base excision repair
mmea03420  Nucleotide excision repair
mmea03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130574100 (RFC4)
   03410 Base excision repair
    130574100 (RFC4)
   03420 Nucleotide excision repair
    130574100 (RFC4)
   03430 Mismatch repair
    130574100 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmea03032]
    130574100 (RFC4)
   03036 Chromosome and associated proteins [BR:mmea03036]
    130574100 (RFC4)
   03400 DNA repair and recombination proteins [BR:mmea03400]
    130574100 (RFC4)
DNA replication proteins [BR:mmea03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    130574100 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    130574100 (RFC4)
Chromosome and associated proteins [BR:mmea03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    130574100 (RFC4)
DNA repair and recombination proteins [BR:mmea03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     130574100 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    130574100 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 AAA_assoc_2 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase Mg_chelatase DUF815 AAA_14 AAA_24 RuvB_N TIP49_C AAA_19 AAA_5 DNAX_ATPase_lid AAA_28 AAA_23 ResIII AAA_7 ParB
Other DBs
NCBI-GeneID: 130574100
NCBI-ProteinID: XP_057223080
LinkDB
Position
Unknown
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVAEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITENIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLINQLHDTVVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccggcctccatcagcaccaagcccgtcgctgccaaggaa
aagagcgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgccccaaaaatgtggatgaagtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctattgttctatggcccacctggaact
ggaaagacttccactattttagcagctgcgagagaactgtttgggcctgatttattccgg
caaagagttcttgagttgaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaactgcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtaatcctggatgaagcagattctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttgacatctcgatgctccaaattccgcttcaagcctttg
tcagacagtatccaacagcagaggctgttggatgttgctgagaaggagcatgtgaaaatc
agtaatgaggcagtatcataccttgtgaaagtgtcagaaggagacttaagaaaagcaatt
acttttcttcagagtgccactcgcctaatgggtgggaaggagattacagagaatataatc
actgaaattgctggggtcatccctaaagaaacgattgatgaattgctattgggctgccag
agtggttcctttgagaaactggaaacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttataaaccagctgcatgacacsgttgtggagagtgaagattacagcgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagatggt
gctgatgaattcttgcagcttatgagtctctgtgcccttgtgatgcagcagctcacacag
aacacctga

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