Malurus melanocephalus (red-backed fairy wren): 130574325
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Entry
130574325 CDS
T09178
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmea03041
]
130574325 (YTHDC2)
Enzymes [BR:
mmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130574325 (YTHDC2)
Spliceosome [BR:
mmea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130574325 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
HA2_N
Ank_2
AAA_22
nSTAND3
ATPase
PhoH
AAA_23
Ank_4
UvrD-helicase
ResIII
AAA_16
AAA_7
AAA_29
AAA_11
Motif
Other DBs
NCBI-GeneID:
130574325
NCBI-ProteinID:
XP_057223473
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRHRRVARRQPGGAAGSSTAAAVRARGEALREVGVDEEVEMAVQLALERFRSGDEAEME
FPSSFTSTERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSELTHTVMTCDLALRTKH
AIRSLIQSFPVTNKERTELLPRTERGNACALESENKEVNKTSGRLNDGIPQVPVKRGESE
FDSFRQSLPILEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVFC
TQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLIISSAALDANLFSRYFGSCPV
IHIQGRPFEVKEMFLEDILRNTGYTNKEMVKYKKEKQQEEKQKNTLAEWCSAQENTNKLE
SRRQKSVPRANEEYNLLDDGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDTDSF
AQVFHLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIHCKSSNGWMAVD
WARRFGQTEVVDLLESYSASFGFGNLDESSLVQKCGSDLSMEDRELLTAYHHSFDDEKVD
LDLIMHLLHSICHSCDVGAILIFLPGYDEIVSLRDRILFDDKRFADNVHRYRVFMLHSSV
QTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALTRVTMLKM
GWISKASAIQRKGRAGRCQPGVCFHLFSRLRFQNMLEFQSPELLKMPLQEICLYTKLLAP
INCXIVDFLMKAPDPPPTVIVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LYAVVLKCLDPVLTIACALACQDPFVLPMLASQKRAAMLCRKRFAAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTNS
ENWAVIKAALVAGMYPNLVHVDREMLVLTEPEEKKVRFHPTSVLGQSQCKKIPPANGQAA
AIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSSFRGGGV
SNDSSDSEMEDKTTANLALLKLDEWLHLRLDPEAAGMLLQLRQKWHSLFLRRMRAPSKPW
SQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWRSSNSRKSSAET
EFSDSSNAEKVAVKSKSPALHQPKKYKEKDILLSKRSSDDRSAQSSVKPADCGSYPSPCA
SPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAFWE
SSTVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgcgtcgcccggcggcagcccggaggggccgcgggaagctcgacg
gccgccgcggtgcgcgcccggggcgaggccctgagggaggtcggcgtggacgaggaggtg
gagatggcggtgcagctcgccctggagcggttccggagcggggacgaggcggagatggaa
tttccttctagtttcactagtactgaaagagcatttgttcaccgcctctgtcagtctctt
ggactggtgtctaaaagcaaaggaaaaggagcaaaccgatacctgactgtaaggaagaag
gatgtgtcagaactaacacatacagtcatgacttgtgatttggctctccgtaccaaacat
gccattcggagcctaattcagagctttcctgtcacaaataaggaacgcacagaactcctg
ccaaggacagagcgaggaaatgcgtgtgctcttgaatctgaaaacaaagaagtgaacaag
acaagtggtcgacttaatgatggtatcccgcaggttcctgtgaaaagaggggaatcagag
tttgattctttcaggcagtcactaccaattcttgaaaaacaggaagaaattgtccaaata
ataaaggacaataaaattgttttgattataggagagacgggatcaggaaaaactactcaa
atccctcagtttatccttgatgattgctacaagaatggaactccctgtcgtgtgttttgt
actcagccaaggcgtttagcagctgttgctgtggctgaaagagtggcagcagaaagaaga
gagaagattggccagacaattggttaccagatccggttagaaagcagggtttctccaaag
actctggtaacattttgcactaatgacatgctgcttcgcacgctgatggcaggagacagc
actctctccactgtgacccatgttattgtggatgaagtacatgagagagataggttcagt
gactttttgctaataaaactgagagatgtgctgcaaaaccagaataatttaaaactgatt
atttctagtgctgctctagatgcaaatcttttcagtaggtattttggaagctgccctgta
atacacatccaaggaagaccttttgaagttaaagagatgtttctggaggatattttgcga
aacactgggtatacaaacaaggagatggtaaagtacaaaaaagagaagcagcaagaagag
aaacagaaaaacactcttgctgagtggtgttcagctcaagaaaacactaacaaactggaa
tctcggagacaaaaatcggttcccagggcaaatgaagagtacaatctgttggatgatggt
ggtgacacagtatttaatcaactaactgaaaaagatgtgaattgccttgaaccgtggata
gtaaaagaaatggattcttgtctttctgacatctggttgcataaagatactgattccttt
gctcaagtgttccatctcattttaactgaaaatgtcagtgtggattataggcacagtgaa
actggtgcgactgctctgatgatctcttcagggagaggctttttgagtcaagtagaacag
ctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggatggctgtggac
tgggctaggcgctttggacagacagaggtggttgatctgttggagtcctacagtgcttca
tttggatttggaaatctggatgaaagttccctggtccaaaaatgtggtagtgaccttagt
atggaggacagagaactactgacagcttatcatcacagttttgatgacgagaaggtggat
ctggatctgataatgcacttactccacagcatctgtcatagttgtgatgtaggagcaatt
ttaatatttcttcctggatatgatgagatagtgagcctgagggaccgcattctttttgac
gacaagagatttgctgacaatgttcacagataccgagttttcatgcttcattcaagtgtg
cagactttggatcagaagaaagtgcttgaaactccaccctctggcatccgcaaaatcatt
ctttcaactaatattgcagagaccagcataacagtcaatgatgttgtatttgtcattgac
tcaggcaaggtgaaagagaagtcttttgatgcactgactcgtgttacaatgctaaaaatg
gggtggatttcaaaagctagtgctatccagagaaaaggcagggctgggcgctgtcagcct
ggagtctgttttcatctcttcagcaggctccgatttcagaatatgctggaatttcagtct
ccagaacttctaaaaatgccacttcaggagatttgtttatacacaaagcttctggctcca
attaattgtscaattgtggactttcttatgaaagctcctgatcctccacctactgtaatt
gtgagaaatgctgtgcacatgcttaagaccatagatgccatggacccttgggaagatctc
actgagcttggttatcacctcactgaattacctgtagagccacacctcggtaaaatggtg
ttgtatgctgttgttctgaagtgcctggaccctgttctgaccattgcctgtgctcttgcc
tgccaagacccttttgtgctgcctatgctggcctcccaaaagcgtgcagccatgctgtgc
aggaagcgttttgctgcagggacattcagtgaccacatggccctgctcagggctttccag
gcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttccta
tcccaggccacaatggaaatcatcgtaggaatgagaacgcagttgcttggccagcttaga
gcctccggttttgtgagagccagaggaggagctgatattagagatgtcaatactaactct
gagaactgggctgtaattaaagcagccttagtggctgggatgtatcccaatcttgtgcat
gtggatmgagaaatgctggttttgactgaaccagaagagaagaaagttcgatttcatcct
acctctgttcttggtcaatctcagtgtaaaaagattcccccagcaaatggacaagctgca
gccatccaggccctccctactgactggcttatatatgacgaaatgaccagagctcacaag
acagcaaacatcaggtgctgctctgttgtgacacctgtcactgtgtccctcttctgtgga
ccagccagactgccaagtaacgccttgcaggcgtcttcatcttttcgagggggtggggta
tctaatgatagcagtgacagtgagatggaagacaaaacaactgctaatctggcactgctg
aagctggatgagtggcttcatctcagactggaccctgaagctgctggtatgctactgcaa
ctcaggcagaagtggcacagcttatttctgcgtcgtatgcgagctccttctaaaccatgg
tcccaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaacag
tctgcaggtctgcagcagccttcaggaattggccagagaccgagacctgtgacttgtgaa
gaacttcctttggcatctacgtggaggtcaagcaacagcagaaaaagctcagcagaaact
gaattctctgactcctctaatgctgaaaaagttgcagtaaaatctaaatctcccgcactg
caccagccaaagaagtacaaagaaaaggacattttgctctccaaacgatcctcagatgac
aggtcagctcagtcctcagtgaagcctgcagactgtggtagctatcccagcccctgtgct
agtccttcttctccagtatctggaaagggctgcaaatctccttcaccacgacaaaatatg
ccagttcgttacttcataatgaaaagtagcaatttgcaaaacattgatatttctcaacag
aagggaatatggtccactacaccaagtaatgaacggaaactgaatggagccttttgggag
agcagcacggtttacttaatattttctgttcaaggatctggatgctttcagggttttgct
agaatgggttcagcgattgggtgtgagaagagtcaagattggggatctgctggttttgga
ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat
ttgctcaatccatggaatgacagtaagaaagtacaaataagtagagatggccaggagctg
gaaccacaagttggagagcagttgctgcagctttgggatcgtattcctttggcaggaaaa
aaactgactgaacatgccaagtaa
DBGET
integrated database retrieval system
