Malurus melanocephalus (red-backed fairy wren): 130578001
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Entry
130578001 CDS
T09178
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmea00536
]
130578001 (COL13A1)
Glycosaminoglycan binding proteins [BR:
mmea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130578001 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130578001
NCBI-ProteinID:
XP_057229741
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAPGPRGQLGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTLKGEQGQAGIQGP
PGPPGPPGPAGPAGPKGIPGHPGPVGPPGRTGEPGKPGRDGKGLPGPPGPKGDAGIQGHP
GRKGEAGESGLPGAHGLPGASGPKGEKGDTGIKGERGMPGLPGRHGFKGAPGVAAAGMKG
EPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPGPKGEKGIAENALVGA
KGEPGPPGLPGPPGPKGEAGDVGRPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEM
MDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPG
ELGPPGPPGLPGKDGPPGIKGEQGHVGVRGEKGDKGEPGQAGPPGLDGPTGEKGERGDQG
IPGPSGLPGPIGLPGLTGEKGEPGQRGDKGNPGELIPGPPGPQGPPGPPGVQGIPGPKGE
AGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGD
PGVAGPMGPIGHPGLQGLPGDKGARGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLP
VQGCWNK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggactaaaagggcagtctggagagaagggtgctccagga
gaggctggcatgtctatcattgggccccgtggtccacccggacagcctggaacaagaggt
tttcctggattcccgggccctattggcttggatggcaaaccgggtcatcctggacagaag
ggagagatgggtgctccaggtcccaggggacaacttggacctccaggacaaaaaggagaa
aagggtcagtgtgcagagtacccgcacagggaatacctaagtaccacccttgcagccctg
cgctctaaccagatccttacgctcaagggtgaacaaggacaagcagggatccaaggtccc
ccagggccccctggtccaccagggcctgctggaccagctggacccaaaggaatcccagga
catcctgggccagttgggccccctggcagaacgggagaacctggaaagcctggcagagat
ggaaagggcttacctgggcctcctggaccaaagggagatgctgggattcagggacaccct
ggcagaaagggtgaggcgggtgagtcaggcctgcctggtgcccatggcctccctggagcc
tctggccccaagggtgaaaaaggggacactggcatcaagggggagagaggcatgccaggg
ctgccaggaagacatggctttaagggtgctcctggggtggccgccgcagggatgaagggc
gagcctgggactccaggagaaaagggagatcctggagtcccagggaggatgggcccccca
ggtttgccagggaagagggggcagcggggtgagaagggacgagctggtgaccctggtctt
cctggactccctggccctaagggagagaagggaattgctgagaatgccttggtgggagct
aaaggagaacctggccctccaggtctgcctggaccccctggaccaaagggagaagctggt
gacgttggccggccgggtgctgcagggtcacagggagaaaagggagaacgtggttcgcca
ggagaccagggacccatgggcccaaggggccctaaaggagagcctgggaaggatgaaatg
atggactatgatgggaacatcagtgaagctctccaggaaatacgaactttggccttgatg
ggacccccaggacttccaggtgtggctggacctccagggccaccaggacagaagggtgaa
attggcttgccaggtcctccaggccacgatggagaaaagggaccacgtggcaagcctgga
gaattgggcccccctggccctcctggacttccaggaaaggatggaccccctggaataaag
ggagagcagggccacgtcggggtcagaggagaaaagggcgataagggagagccaggacaa
gcgggcccaccgggtctagatggccccactggagagaaaggagaacgaggtgaccaaggg
ataccaggaccatcaggattgccaggtcccattggacttccaggattgacaggagagaag
ggtgagcctgggcagcgtggagacaaaggaaacccaggagaattgatacctgggccccct
ggaccccaaggccctccaggacctccgggtgttcagggcatcccaggacccaagggggaa
gcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagaggg
ccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtattcca
ggaccaattggggtttcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagat
cctggagttgcaggaccaatggggccaatagggcatcctggtttacaaggtctacctggt
gacaagggagcccggggggagaggggcaagaaaggctctagagggtctaaaggggataag
ggagaccaaggagcacctggattagatgcaccctgtccgttgggggaagatggccttcca
gttcagggctgctggaataagtga
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